The ferroptosis-related gene GGTLC2 is identified as a novel biomarker for gastric cancer within the GGT family, with associations to immune infiltration and liver metastasis

IF 3.9 4区 生物学 Q1 GENETICS & HEREDITY
Nan Yan, Jianhong Liu, Gaofu Li, Linglin Zhao, Jie Yang, Qijing Guo, Wei Zhou, Yushuang Luo, Yue Gao
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Abstract

Gastric cancer (GC) has a high incidence and poor prognosis, often metastasizing to the liver. Gamma-glutamyl transferase (GGT) is a key indicator of liver damage, and its family members are associated with various cancers. However, their expression and prognostic significance in GC remain unclear. This study utilized R to analyze the expression and prognosis of GGT family members using RNA-seq and clinical data from the TCGA database, applying Lasso regression for key gene identification. We identified GGTLC2 as a significant gene related to GC prognosis. We examined the clinical relevance, methylation levels, and copy number variations of GGTLC2 using the MEXPRESS database and performed GSEA analysis to identify enriched pathways. Additionally, we explored the relationship between GGTLC2 and immune cell infiltration, as well as immune-related genes, and established GGTLC2 knockdown and overexpression cell lines. The results indicate that GGTLC2 is highly expressed in GC and is associated with DNA methylation, copy number variation, and liver metastasis. Functionally, GGTLC2 is primarily enriched in oxidative stress and immune-related pathways, affecting immune infiltration and the expression of inflammatory factors in the tumor microenvironment. In vivo and in vitro studies demonstrate that knocking down GGTLC2 inhibits GC proliferation, invasion, and migration while promoting apoptosis and ferroptosis. Conversely, overexpressing GGTLC2 significantly increases the number of metastatic tumors in the liver. Overall, GGTLC2 may influence the occurrence, development, and liver metastasis of GC by inhibiting ferroptosis, making it a promising novel biomarker for the diagnosis and treatment of GC and its metastasis.

嗜铁相关基因GGTLC2被确定为GGT家族中胃癌的新生物标志物,与免疫浸润和肝转移有关
胃癌(GC)发病率高,预后差,常转移至肝脏。γ -谷氨酰转移酶(GGT)是肝损伤的关键指标,其家族成员与多种癌症有关。然而,它们在胃癌中的表达和预后意义尚不清楚。本研究利用RNA-seq和TCGA数据库的临床数据,利用R分析GGT家族成员的表达和预后,并应用Lasso回归进行关键基因鉴定。我们发现GGTLC2是一个与胃癌预后相关的重要基因。我们使用MEXPRESS数据库检查了GGTLC2的临床相关性、甲基化水平和拷贝数变化,并进行了GSEA分析以确定富集通路。此外,我们探索了GGTLC2与免疫细胞浸润以及免疫相关基因的关系,建立了GGTLC2敲低和过表达细胞系。结果表明,GGTLC2在胃癌中高表达,并与DNA甲基化、拷贝数变异和肝转移有关。功能上,GGTLC2主要富集于氧化应激和免疫相关通路,影响肿瘤微环境中免疫浸润和炎症因子的表达。体内和体外研究表明,敲低GGTLC2可抑制GC增殖、侵袭和迁移,同时促进细胞凋亡和铁下垂。相反,过表达GGTLC2可显著增加肝脏转移瘤的数量。综上所述,GGTLC2可能通过抑制铁下垂影响胃癌的发生、发展和肝转移,是一种很有前景的诊断和治疗胃癌及其转移的新型生物标志物。
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来源期刊
CiteScore
3.50
自引率
3.40%
发文量
92
审稿时长
2 months
期刊介绍: Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?
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