Genome-based reclassification of Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2009 as a later heterotypic synonym of Terribacillus saccharophilus An et al. 2007.

IF 2 3区 生物学 Q4 MICROBIOLOGY
Theresa Hauser, Paul A Lawson, Durward L Bevis, Richard W McLaughlin
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引用次数: 0

Abstract

The present study used whole-genome data to clarify the taxonomic assignment of two closely related Terribacillus species. The genus Terribacillus includes four species with validly published names, Terribacillus aidingensis, T. goriensis, T. halophilus and T. saccharophilus. The type species T. saccharophilus 002-048T (=IAM 15309T=KCTC 13936T) was isolated from the soil in Japan, while T. goriensis CL-GR16T (=KCCM 42329T=DSM 18252T) was isolated from the coastal water off the east coast of Korea. Both strains have similar phenotypic and chemotaxonomic characteristics. Anteiso-C15 : 0 was the major fatty acid, followed by anteiso-C17 : 0 and iso-C15 : 0. There were similar major menaquinones (MK-7). As determined by whole-genome sequencing, the DNA G+C content of 42.53 and 42.66 mol% was found for T. saccharophilus and T. goriensis, respectively, and they were 99.86% identical in their 16S rRNA gene sequences (1,421 bp). Genomic comparisons showed the average nucleotide identity was 98.29% and 84.80% for digital DNA-DNA hybridization. These values exceeded the threshold values for bacterial species delineation. Using the Type (Strain) Genome Server, both species were identified as T. saccharophilus. Phylogenetic analysis based on both 16S rRNA gene sequences and whole-genome sequences showed that they form a separate cluster apart from members of other genera. Based on the combined evidence, Terribacillus goriensis Kim et al. (Int J Syst Evol Microbiol 2007;57:1554-1560), Krishnamurthi and Chakrabarti (Int J Syst Evol Microbiol 2008;58:2287-2291) is proposed to be a later heterotypic synonym of An et al. (Int J Syst Evol Microbiol 2007;57:51-55).

Krishnamurthi和Chakrabarti 2009作为嗜糖Terribacillus saccharophilus的后异型同系物。
本研究利用全基因组数据澄清了两个密切相关的Terribacillus物种的分类分配。芽孢杆菌属包括四个已有效公布名称的种:辅助芽孢杆菌、哥里芽孢杆菌、嗜盐芽孢杆菌和嗜糖芽孢杆菌。模式种T. saccharophilus 002-048T (=IAM 15309T=KCTC 13936T)分离自日本土壤,T. gooriensis CL-GR16T (=KCCM 42329T=DSM 18252T)分离自韩国东海岸沿海水域。两种菌株具有相似的表型和化学分类特征。主要脂肪酸为Anteiso-C15: 0,其次为anteiso-C17: 0和iso-C15: 0。有相似的主要甲基萘醌(MK-7)。全基因组测序结果显示,T. saccharophilus和T. gooriensis的DNA G+C含量分别为42.53 mol%和42.66 mol%,其16S rRNA基因序列(1421 bp)同源性为99.86%。基因组比较显示,数字DNA-DNA杂交的平均核苷酸同源性为98.29%,84.80%。这些值超过了细菌种类划分的阈值。利用类型(菌株)基因组服务器,鉴定这两个物种为saccharophilus。基于16S rRNA基因序列和全基因组序列的系统发育分析表明,它们与其他属成员形成了一个独立的聚类。综合证据,认为Terribacillus gooriensis Kim et al. (Int J system evolution Microbiol 2007;57:1554-1560)和Krishnamurthi and Chakrabarti (Int J system evolution Microbiol 2008; 58:28 7-2291)是An et al. (Int J system evolution Microbiol 2007;57:51-55)的后异型同义种。
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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
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