Estimation of the lifetime distribution from fluctuations in Bellman-Harris processes.

IF 2.2 4区 数学 Q2 BIOLOGY
Jules Olayé, Hala Bouzidi, Andrey Aristov, Antoine Barizien, Salomé Gutiérrez Ramos, Charles Baroud, Vincent Bansaye
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引用次数: 0

Abstract

The growth of populations without interactions can often be modeled by branching processes where each individual evolves independently and with the same law. In Bellman-Harris processes, each individual lives a random time and is then replaced by a random number of offspring. We are interested in the estimation of the parameters of this model. Our motivation comes from the estimation of cell division time and we focus on Gamma distribution for lifetime and binary reproduction. The mean of the lifetime is closely related to the growth rate of the population. Going farther and describing lifetime variability from fixed time observations is a challenging task, due to the complexity of the fluctuations of non-Markovian branching processes. Using fine results on these fluctuations, we describe two time-asymptotic regimes and explain how to discriminate between them and estimate the parameters. Then, we consider simulations and biological data to validate and discuss our method. It allows to determine single-cell parameters from time-resolved measurements of populations without the need to track each individual or to know the details of the initial condition. The results can be extended to more general branching processes.

Bellman-Harris过程波动的寿命分布估计。
在没有相互作用的情况下,种群的增长通常可以通过分支过程来模拟,在分支过程中,每个个体都按照相同的规律独立进化。在Bellman-Harris过程中,每个个体的寿命是随机的,然后被随机数量的后代所取代。我们感兴趣的是对这个模型参数的估计。我们的动机来自于对细胞分裂时间的估计,我们关注的是寿命和二元生殖的伽马分布。人的平均寿命与人口增长率密切相关。由于非马尔可夫分支过程波动的复杂性,从固定时间观测进一步描述寿命变异性是一项具有挑战性的任务。利用这些波动的精细结果,我们描述了两种时间渐近状态,并解释了如何区分它们和估计参数。然后,我们考虑模拟和生物数据来验证和讨论我们的方法。它允许从种群的时间分辨测量中确定单细胞参数,而不需要跟踪每个个体或知道初始条件的细节。结果可以扩展到更一般的分支过程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
3.30
自引率
5.30%
发文量
120
审稿时长
6 months
期刊介绍: The Journal of Mathematical Biology focuses on mathematical biology - work that uses mathematical approaches to gain biological understanding or explain biological phenomena. Areas of biology covered include, but are not restricted to, cell biology, physiology, development, neurobiology, genetics and population genetics, population biology, ecology, behavioural biology, evolution, epidemiology, immunology, molecular biology, biofluids, DNA and protein structure and function. All mathematical approaches including computational and visualization approaches are appropriate.
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