Image-Based Search in Radiology: Identification of Brain Tumor Subtypes within Databases Using MRI-Based Radiomic Features.

Marc von Reppert, Saahil Chadha, Klara Willms, Arman Avesta, Nazanin Maleki, Tal Zeevi, Jan Lost, Niklas Tillmanns, Leon Jekel, Sara Merkaj, MingDe Lin, Karl-Titus Hoffmann, Sanjay Aneja, Mariam S Aboian
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Abstract

Background and purpose: Existing neuroradiology reference materials do not cover the full range of primary brain tumor presentations, and text-based medical image search engines are limited by the lack of consistent structure in radiology reports. To address this, an image-based search approach is introduced here, leveraging an institutional database to find reference MRIs visually similar to presented query cases.

Materials and methods: Two hundred ninety-five patients (mean age and standard deviation, 51 ± 20 years) with primary brain tumors who underwent surgical and/or radiotherapeutic treatment between 2000 and 2021 were included in this retrospective study. Semiautomated convolutional neural network-based tumor segmentation was performed, and radiomic features were extracted. The data set was split into reference and query subsets, and dimensionality reduction was applied to cluster reference cases. Radiomic features extracted from each query case were projected onto the clustered reference cases, and nearest neighbors were retrieved. Retrieval performance was evaluated by using mean average precision at k, and the best-performing dimensionality reduction technique was identified. Expert readers independently rated visual similarity by using a 5-point Likert scale.

Results: t-Distributed stochastic neighbor embedding with 6 components was the highest-performing dimensionality reduction technique, with mean average precision at 5 ranging from 78%-100% by tumor type. The top 5 retrieved reference cases showed high visual similarity Likert scores with corresponding query cases (76% 'similar' or 'very similar').

Conclusions: We introduce an image-based search method for exploring historical MR images of primary brain tumors and fetching reference cases closely resembling queried ones. Assessment involving comparison of tumor types and visual similarity Likert scoring by expert neuroradiologists validates the effectiveness of this method.

放射学中基于图像的搜索:使用基于mri的放射学特征在数据库中识别脑肿瘤亚型。
背景与目的:现有的神经放射学参考资料不能涵盖原发性脑肿瘤的全部表现,基于文本的医学图像搜索引擎受到放射学报告缺乏一致结构的限制。为了解决这个问题,本文介绍了一种基于图像的搜索方法,利用一个机构数据库来查找参考mri,在视觉上与所提供的查询案例相似。材料和方法:本回顾性研究纳入了2000年至2021年间接受手术和/或放射治疗的295例原发性脑肿瘤患者(平均年龄和SD为51±20岁)。基于半自动卷积神经网络进行肿瘤分割,提取放射学特征。将数据集划分为参考子集和查询子集,并对聚类参考案例进行降维处理。从每个查询案例中提取的放射特征被投影到聚类参考案例中,并获得最近邻。使用k处的平均精度来评估检索性能,并确定了性能最佳的降维技术。专业读者使用李克特五分制独立评定视觉相似性。结果:具有6个分量的t分布随机邻居嵌入是表现最好的降维技术,根据肿瘤类型,平均精度在5的平均值在78%到100%之间。前5个检索到的参考案例与相应的查询案例显示出很高的视觉相似性(76%为“相似”或“非常相似”)。结论:我们介绍了一种基于图像的搜索方法,用于探索原发性脑肿瘤的历史MR图像,并提取与查询的相似的参考病例。由神经放射专家对肿瘤类型和视觉相似性Likert评分进行比较,验证了该方法的有效性。缩写:PCA =主成分分析;t-SNE = t分布随机邻居嵌入;均匀流形逼近与投影;基于亲和力的轨迹嵌入热扩散势G/A =胶质母细胞瘤和星形细胞瘤CNS世界卫生组织四级;A/O =星形细胞瘤和少突胶质细胞瘤CNS世界卫生组织分级2-3;PA =毛细胞星形细胞瘤;MEN =脑膜瘤;mAP@k = k处的平均精度;CNN =卷积神经网络。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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