Validation of microphysiological systems for interpreting patient heterogeneity requires robust reproducibility analytics and experimental metadata.

IF 4.3 Q1 BIOCHEMICAL RESEARCH METHODS
Cell Reports Methods Pub Date : 2025-04-21 Epub Date: 2025-04-14 DOI:10.1016/j.crmeth.2025.101028
Mark T Miedel, Mahboubeh Varmazyad, Mengying Xia, Maria Mori Brooks, Dillon C Gavlock, Celeste Reese, Jaideep Behari, Alejandro Soto-Gutierrez, Albert Gough, D Lansing Taylor, Mark E Schurdak
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引用次数: 0

Abstract

Multi-cell-type, 3D microphysiological systems (MPS) that recapitulate normal organ/organ system functions and the progression of diseases are being applied in drug discovery and development programs to enable precision medicine. A critical step for this application is to demonstrate the reproducibility of the MPS and its ability to identify biologic/clinical heterogeneity from experimental variability, which requires capturing detailed metadata associated with MPS studies as well as a strong analytical approach for assessing reproducibility. Detailed metadata ensure that identical study parameters are being compared when evaluating reproducibility. We have developed the Pittsburgh reproducibility protocol (PReP), which uses a set of common statistical metrics, the coefficient of variation (CV), ANOVA, and intraclass correlation coefficient (ICC), in a pipeline as a standard approach to evaluate the intra- and interstudy reproducibility of MPS performance. The PReP can be employed to identify biological/clinical heterogeneity relevant to precision medicine.

验证用于解释患者异质性的微生理系统需要可靠的可重复性分析和实验元数据。
多细胞型、3D微生理系统(MPS)概括了正常器官/器官系统的功能和疾病的进展,正被应用于药物发现和开发项目,以实现精准医疗。该应用程序的关键步骤是证明MPS的可重复性及其从实验变异性中识别生物/临床异质性的能力,这需要捕获与MPS研究相关的详细元数据以及用于评估可重复性的强大分析方法。详细的元数据确保在评估可重复性时比较相同的研究参数。我们开发了匹兹堡重复性方案(PReP),该方案使用一组常见的统计指标,变异系数(CV),方差分析(ANOVA)和类内相关系数(ICC),作为评估MPS性能的研究内和研究间重复性的标准方法。PReP可用于识别与精准医学相关的生物学/临床异质性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Cell Reports Methods
Cell Reports Methods Chemistry (General), Biochemistry, Genetics and Molecular Biology (General), Immunology and Microbiology (General)
CiteScore
3.80
自引率
0.00%
发文量
0
审稿时长
111 days
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