DM_CorrMatch: a semi-supervised semantic segmentation framework for rapeseed flower coverage estimation using UAV imagery.

IF 4.4 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Jie Li, Chengyong Zhu, Chenbo Yang, Quan Zheng, Binhui Wang, Jingmin Tu, Qian Zhang, Sheng Liu, Xinfa Wang, Jiangwei Qiao
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引用次数: 0

Abstract

Rapeseed (Brassica napus L.) inflorescence coverage is a crucial phenotypic parameter for assessing crop growth and estimating yield. Accurate crop cover assessment is typically performed using Unmanned Aerial Vehicles (UAVs) in combination with semantic segmentation methods. However, the irregular and variable morphology of rapeseed inflorescences presents significant challenges in segmentation. To address these challenges, advanced methods that can improve segmentation accuracy, particularly under limited data conditions, are needed. In this study, we propose a cost-effective and high-throughput approach using a semi-supervised learning framework, DM_CorrMatch. This method enhances input images through strong and weak data augmentation techniques, while leveraging the Denoising Diffusion Probabilistic Model (DDPM) to generate additional samples in data-scarce scenarios. We propose an automatic update strategy for labeled data to dilute the proportion of erroneous labels in manual segmentation. Furthermore, a novel network architecture, Mamba-Deeplabv3+, is proposed, combining the strengths of Mamba and Convolutional Neural Networks (CNNs) for both global and local feature extraction. This architecture effectively captures key inflorescence features, even under varying poses, while reducing the influence of complex backgrounds. The proposed method is validated on the Rapeseed Flower Segmentation Dataset (RFSD), which consists of 720 UAV images from the Yangluo experimental station of the Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (CAAS). The experimental results showed that our method outperforms four traditional segmentation methods and eleven deep learning methods, achieving an Intersection over Union (IoU) of 0.886, Precision of 0.942, and Recall of 0.940. The proposed semi-supervised learning-based method, combined with the Mamba-Deeplabv3+ architecture, demonstrates superior performance in accurately segmenting rapeseed inflorescences under challenging conditions. Our approach effectively handles complex backgrounds and various poses of inflorescences, providing a reliable tool for rapeseed flower cover estimation. This method can aid in the development of high-yield cultivars and improve crop monitoring through UAV-based technologies.

DM_CorrMatch:基于无人机图像的油菜花覆盖估计的半监督语义分割框架。
油菜(Brassica napus L.)花序盖度是评价作物生长和估计产量的重要表型参数。准确的作物覆盖评估通常使用无人机(uav)结合语义分割方法进行。然而,油菜籽花序形态的不规则性和多变性给分割带来了很大的挑战。为了应对这些挑战,需要能够提高分割精度的先进方法,特别是在有限的数据条件下。在本研究中,我们提出了一种使用半监督学习框架DM_CorrMatch的高成本效益和高通量方法。该方法通过强弱数据增强技术增强输入图像,同时利用去噪扩散概率模型(DDPM)在数据稀缺的情况下生成额外的样本。我们提出了一种自动更新标记数据的策略,以减少人工分割中错误标签的比例。此外,提出了一种新的网络架构Mamba- deeplabv3 +,结合了Mamba和卷积神经网络(cnn)在全局和局部特征提取方面的优势。这种结构有效地捕捉了关键的花序特征,即使在不同的姿势下,同时减少了复杂背景的影响。在中国农业科学院油料作物研究所杨洛实验站720幅无人机图像组成的油菜花分割数据集(RFSD)上对该方法进行了验证。实验结果表明,该方法优于4种传统的分割方法和11种深度学习方法,达到了相交超过联合(IoU)为0.886,精度为0.942,召回率为0.940。提出的基于半监督学习的方法,结合Mamba-Deeplabv3+架构,在具有挑战性的条件下,在准确分割油菜籽花序方面表现出优异的性能。该方法有效地处理了复杂背景和不同姿态的花序,为油菜籽花覆盖估算提供了可靠的工具。这种方法可以帮助开发高产品种,并通过基于无人机的技术改善作物监测。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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