De novo assembly and annotation of the Empoasca fabae mitochondrial genome.

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY

Mitochondrial DNA. Part B, Resources Pub Date : 2025-05-05 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2498740

Joshua Molligan, Jordanne Jacques, Soham Mukhopadhyay, Edel Pérez-López

引用次数: 0

Abstract

This study presents the assembly and annotation of the full-length mitochondrial genome for the leafhopper species Empoasca fabae Harris, 1841. The mitogenome was obtained from a contig-level assembly with the identified mitochondrial genome being 14,873 bp in length. The base composition was A (38.8%), T (39.1%), C (11.7%), and G (10.4%). The mitogenome comprised 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and showed a unique, non-AT-rich D-loop region. Phylogenetic analysis confirmed the placement of E. fabae within the subfamily Typhlocybinae, clustering with other species in the Empoasca genus.

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蚕豆线粒体基因组的从头组装和注释。

本文介绍了叶蝉物种Empoasca fabae Harris， 1841的全长线粒体基因组的组装和注释。从contig-level组装获得有丝分裂基因组，鉴定的线粒体基因组长度为14,873 bp。碱基组成为A（38.8%）、T（39.1%）、C（11.7%）和G（10.4%）。有丝分裂基因组包括13个蛋白质编码基因（PCGs）、22个转移RNA基因（tRNAs）和2个核糖体RNA基因（rrna），并显示出一个独特的非at -rich D-loop区域。系统发育分析证实，豆瓣豆属豆瓣豆亚科，与豆瓣豆属的其他种聚类在一起。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.