Integrated Genomic Analysis of Lung Squamous Cell Carcinoma Subtypes Characterized by Immunogenic Cell Death-Relevant Gene Signature.

IF 2.8 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
OncoTargets and therapy Pub Date : 2025-04-11 eCollection Date: 2025-01-01 DOI:10.2147/OTT.S503419
Yuhan Wang, Shuang Wang, Ran Ding, Zequn Zhang, Jing Kong, Tian Xie, Bin Xu, Liming Fu, Erli Zhang
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引用次数: 0

Abstract

Purpose: The objective of this study was to identify biomarkers associated with immunogenic cell death (ICD) in lung squamous cell carcinoma (LUSC), focusing on subtypes with distinct immunological characteristics and prognosis. Given the heterogeneous nature of LUSC, understanding ICD's role is crucial for developing tailored therapeutic strategies.

Patients and methods: RNA sequencing data from 504 LUSC samples were analyzed using unsupervised clustering to identify ICD-related gene expression patterns. These patterns were linked to immune scores, immune cell infiltration, and clinical outcomes. A separate dataset was used to validate the association between ICD-related subtypes and immunotherapy efficacy.

Results: Unsupervised clustering revealed two distinct ICD-related subtypes with significantly different immune scores, immune cell infiltration levels, and prognosis. A prognostic model was developed based on differentially expressed ICD-related genes, which demonstrated strong predictive power for patient survival and immune response. This model may offer valuable insights for clinical decision-making, particularly for immunotherapy strategies.

Conclusion: This study identified key ICD-related biomarkers and developed a prognostic model that can enhance our understanding of ICD in LUSC, ultimately guiding personalized treatment approaches.

以免疫原性细胞死亡相关基因标记为特征的肺鳞状细胞癌亚型的综合基因组分析
目的:本研究的目的是鉴定与肺鳞状细胞癌(LUSC)中免疫原性细胞死亡(ICD)相关的生物标志物,重点关注具有不同免疫学特征和预后的亚型。鉴于LUSC的异质性,了解ICD的作用对于制定量身定制的治疗策略至关重要。患者和方法:使用无监督聚类分析504份LUSC样本的RNA测序数据,以确定icd相关基因表达模式。这些模式与免疫评分、免疫细胞浸润和临床结果有关。使用单独的数据集验证icd相关亚型与免疫治疗疗效之间的关联。结果:无监督聚类揭示了两种不同的icd相关亚型,它们具有显著不同的免疫评分、免疫细胞浸润水平和预后。基于差异表达的icd相关基因建立了预后模型,该模型对患者生存和免疫反应具有很强的预测能力。该模型可能为临床决策,特别是免疫治疗策略提供有价值的见解。结论:本研究确定了关键的ICD相关生物标志物,并建立了一个预后模型,可以增强我们对LUSC中ICD的理解,最终指导个性化治疗方法。
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来源期刊
OncoTargets and therapy
OncoTargets and therapy BIOTECHNOLOGY & APPLIED MICROBIOLOGY-ONCOLOGY
CiteScore
9.70
自引率
0.00%
发文量
221
审稿时长
1 months
期刊介绍: OncoTargets and Therapy is an international, peer-reviewed journal focusing on molecular aspects of cancer research, that is, the molecular diagnosis of and targeted molecular or precision therapy for all types of cancer. The journal is characterized by the rapid reporting of high-quality original research, basic science, reviews and evaluations, expert opinion and commentary that shed novel insight on a cancer or cancer subtype. Specific topics covered by the journal include: -Novel therapeutic targets and innovative agents -Novel therapeutic regimens for improved benefit and/or decreased side effects -Early stage clinical trials Further considerations when submitting to OncoTargets and Therapy: -Studies containing in vivo animal model data will be considered favorably. -Tissue microarray analyses will not be considered except in cases where they are supported by comprehensive biological studies involving multiple cell lines. -Biomarker association studies will be considered only when validated by comprehensive in vitro data and analysis of human tissue samples. -Studies utilizing publicly available data (e.g. GWAS/TCGA/GEO etc.) should add to the body of knowledge about a specific disease or relevant phenotype and must be validated using the authors’ own data through replication in an independent sample set and functional follow-up. -Bioinformatics studies must be validated using the authors’ own data through replication in an independent sample set and functional follow-up. -Single nucleotide polymorphism (SNP) studies will not be considered.
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