Semantic Consistency Network with Edge Learner and Connectivity Enhancer for Cervical Tumor Segmentation from Histopathology Images.

IF 3.9 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Lisha Pang, Peng He, Yue Han, Hao Cui, Peng Feng, Chi Zhang, Pan Huang, Sukun Tian
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Abstract

Accurate tumor grading and regional identification of cervical tumors are important for diagnosis and prognosis. Traditional manual microscopy methods suffer from time-consuming, labor-intensive, and subjective bias problems, so tumor segmentation methods based on deep learning are gradually becoming a hotspot in current research. Cervical tumors have diverse morphologies, which leads to low similarity between the mask edge and ground-truth edge of existing semantic segmentation models. Moreover, the texture and geometric arrangement features of normal tissues and tumors are highly similar, which causes poor pixel connectivity in the mask of the segmentation model. To this end, we propose an end-to-end semantic consistency network with the edge learner and the connectivity enhancer, i.e., ERNet. First, the edge learner consists of a stacked shallow convolutional neural network, so it can effectively enhance the ability of ERNet to learn and represent polymorphic tumor edges. Second, the connectivity enhancer learns detailed information and contextual information of tumor images, so it can enhance the pixel connectivity of the masks. Finally, edge features and pixel-level features are adaptively coupled, and the segmentation results are additionally optimized by the tumor classification task as a whole. The results show that, compared with those of other state-of-the-art segmentation models, the structural similarity and the mean intersection over union of ERNet are improved to 88.17% and 83.22%, respectively, which reflects the excellent edge similarity and pixel connectivity of the proposed model. Finally, we conduct a generalization experiment on laryngeal tumor images. Therefore, the ERNet network has good clinical popularization and practical value.

基于边缘学习器和连接增强器的语义一致性网络在组织病理图像中分割子宫颈肿瘤。
宫颈肿瘤的准确分级和区域识别对诊断和预后具有重要意义。传统的人工显微镜方法存在耗时、费力、主观偏倚等问题,因此基于深度学习的肿瘤分割方法逐渐成为当前研究的热点。宫颈肿瘤形态多样,导致现有语义分割模型的掩模边缘与真值边缘相似度较低。此外,正常组织和肿瘤的纹理和几何排列特征高度相似,导致分割模型掩模中像素连通性差。为此,我们提出了一个包含边缘学习器和连通性增强器的端到端语义一致性网络,即ERNet。首先,边缘学习器由一个堆叠的浅卷积神经网络组成,因此可以有效增强ERNet学习和表示多态肿瘤边缘的能力。其次,连通性增强器学习肿瘤图像的细节信息和上下文信息,从而增强掩模的像素连通性。最后,对边缘特征和像素级特征进行自适应耦合,并对分割结果进行整体优化。结果表明,与其他最先进的分割模型相比,ERNet的结构相似度和平均交联度分别提高到88.17%和83.22%,这反映了该模型具有良好的边缘相似度和像素连通性。最后,我们对喉部肿瘤图像进行了泛化实验。因此,ERNet网络具有良好的临床推广和实用价值。
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来源期刊
Interdisciplinary Sciences: Computational Life Sciences
Interdisciplinary Sciences: Computational Life Sciences MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
8.60
自引率
4.20%
发文量
55
期刊介绍: Interdisciplinary Sciences--Computational Life Sciences aims to cover the most recent and outstanding developments in interdisciplinary areas of sciences, especially focusing on computational life sciences, an area that is enjoying rapid development at the forefront of scientific research and technology. The journal publishes original papers of significant general interest covering recent research and developments. Articles will be published rapidly by taking full advantage of internet technology for online submission and peer-reviewing of manuscripts, and then by publishing OnlineFirstTM through SpringerLink even before the issue is built or sent to the printer. The editorial board consists of many leading scientists with international reputation, among others, Luc Montagnier (UNESCO, France), Dennis Salahub (University of Calgary, Canada), Weitao Yang (Duke University, USA). Prof. Dongqing Wei at the Shanghai Jiatong University is appointed as the editor-in-chief; he made important contributions in bioinformatics and computational physics and is best known for his ground-breaking works on the theory of ferroelectric liquids. With the help from a team of associate editors and the editorial board, an international journal with sound reputation shall be created.
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