GPU acceleration of hybrid functional calculations in the SPARC electronic structure code.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Xin Jing, Abhiraj Sharma, John E Pask, Phanish Suryanarayana
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引用次数: 0

Abstract

We present a Graphics Processing Unit (GPU)-accelerated version of the real-space SPARC electronic structure code for performing hybrid functional calculations in generalized Kohn-Sham density functional theory. In particular, we develop a batch variant of the recently formulated Kronecker product-based linear solver for the simultaneous solution of multiple linear systems. We then develop a modular, math kernel based implementation for hybrid functionals on NVIDIA architectures, where computationally intensive operations are offloaded to the GPUs, while the remaining workload is handled by the central processing units (CPUs). Considering bulk and slab examples, we demonstrate that GPUs enable up to 8× speedup in node-hours and 80× in core-hours compared to CPU-only execution, reducing the time to solution on V100 GPUs to around 300 s for a metallic system with over 6000 electrons, and significantly reducing the computational resources required for a given wall time.

GPU加速混合泛函计算中的SPARC电子结构代码。
我们提出了一个图形处理单元(GPU)加速版本的实空间SPARC电子结构代码,用于执行广义Kohn-Sham密度泛函理论中的混合泛函计算。特别是,我们开发了最近制定的基于Kronecker产品的线性求解器的批量变体,用于同时解决多个线性系统。然后,我们为NVIDIA架构上的混合功能开发了一个模块化的、基于数学内核的实现,其中计算密集型操作被卸载到gpu上,而剩余的工作负载由中央处理单元(cpu)处理。考虑到批量和平板示例,我们证明了与仅cpu执行相比,gpu在节点小时内可实现高达8倍的加速,在核心小时内可实现高达80倍的加速,对于具有超过6000个电子的金属系统,将V100 gpu上的解决时间缩短至300秒左右,并显着减少了给定壁时间所需的计算资源。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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