From One Strand Dyed/Undyed Hair With/Without Root to Fast and Successful STR Profiling and Evaluation With Principle Component Analysis.

IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
ELECTROPHORESIS Pub Date : 2025-05-02 DOI:10.1002/elps.8142
Gulten Rayimoglu, Fatma Cavus Yonar, Beril Anılanmert
{"title":"From One Strand Dyed/Undyed Hair With/Without Root to Fast and Successful STR Profiling and Evaluation With Principle Component Analysis.","authors":"Gulten Rayimoglu, Fatma Cavus Yonar, Beril Anılanmert","doi":"10.1002/elps.8142","DOIUrl":null,"url":null,"abstract":"<p><p>Fallen/shed single hair shafts with/without roots can be encountered as evidence in crime scenes. Identification from hair exhibits serious difficulties, due to the low amount of DNA, PCR inhibitors, and the existence of DNA mostly in degraded forms. Exposure of hair to chemical oxidation, sunlight, etc. brings extra difficulties to DNA analysis. In single hair shafts, no satisfactory nuDNA test method that can be used both for dyed/undyed single hair shafts with/without root exists in the literature. Next-generation systems are expensive, have a labor-intensive workflow, and are not available in many forensic laboratories. Here an STR profiling method has been developed modifying an isolation kit method for an easy, successful DNA for (1) dyed/undyed single hairs with root and (2) without root from 36 individuals and compared with the unmodified method (total 432 analyzed samples). Modified silica-based isolation method, yielded 0.65-1.05 ng/µL DNA. The success of STR typing after capillary electrophoresis was 96%-98% for dyed/undyed hair with roots and 89%-93% for rootless ones, while the results for the unmodified method were 67%-82%. The results were investigated using PCA, t-test, and F-test. This protocol is simple, inexpensive, does not require automation, and can be performed using kits/equipment available in every forensic laboratory for forensic genotyping.</p>","PeriodicalId":11596,"journal":{"name":"ELECTROPHORESIS","volume":" ","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2025-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ELECTROPHORESIS","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/elps.8142","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

Fallen/shed single hair shafts with/without roots can be encountered as evidence in crime scenes. Identification from hair exhibits serious difficulties, due to the low amount of DNA, PCR inhibitors, and the existence of DNA mostly in degraded forms. Exposure of hair to chemical oxidation, sunlight, etc. brings extra difficulties to DNA analysis. In single hair shafts, no satisfactory nuDNA test method that can be used both for dyed/undyed single hair shafts with/without root exists in the literature. Next-generation systems are expensive, have a labor-intensive workflow, and are not available in many forensic laboratories. Here an STR profiling method has been developed modifying an isolation kit method for an easy, successful DNA for (1) dyed/undyed single hairs with root and (2) without root from 36 individuals and compared with the unmodified method (total 432 analyzed samples). Modified silica-based isolation method, yielded 0.65-1.05 ng/µL DNA. The success of STR typing after capillary electrophoresis was 96%-98% for dyed/undyed hair with roots and 89%-93% for rootless ones, while the results for the unmodified method were 67%-82%. The results were investigated using PCA, t-test, and F-test. This protocol is simple, inexpensive, does not require automation, and can be performed using kits/equipment available in every forensic laboratory for forensic genotyping.

从一根染/未染头发(带/不带根)到快速、成功的STR分析和主成分分析评价。
掉落/脱落的单根有根/没有根的毛干可以在犯罪现场作为证据。由于DNA含量低,PCR抑制剂含量低,并且DNA大多以降解形式存在,因此从头发中进行鉴定存在严重困难。头发暴露在化学氧化、阳光等环境下会给DNA分析带来额外的困难。在单根发干中,文献中没有令人满意的nuna检测方法,可以同时用于染色/未染色的单根发干和无根发干。下一代系统价格昂贵,工作流程劳动密集,并且在许多法医实验室中无法使用。本文开发了一种STR分析方法,对一种分离试剂盒方法进行了修改,以简单、成功地对36个个体(1)染色/未染色的有根和(2)无根的单根头发进行DNA分析,并与未修改的方法(共432个分析样本)进行了比较。改进的硅基分离方法,得到0.65 ~ 1.05 ng/µL的DNA。有根染色/未染发毛细管电泳STR分型成功率为96% ~ 98%,无根染色/未染发STR分型成功率为89% ~ 93%,未染/未染发STR分型成功率为67% ~ 82%。采用主成分分析、t检验和f检验对结果进行分析。该方案简单、廉价,不需要自动化,并且可以使用每个法医实验室可用的试剂盒/设备进行法医基因分型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
ELECTROPHORESIS
ELECTROPHORESIS 生物-分析化学
CiteScore
6.30
自引率
13.80%
发文量
244
审稿时长
1.9 months
期刊介绍: ELECTROPHORESIS is an international journal that publishes original manuscripts on all aspects of electrophoresis, and liquid phase separations (e.g., HPLC, micro- and nano-LC, UHPLC, micro- and nano-fluidics, liquid-phase micro-extractions, etc.). Topics include new or improved analytical and preparative methods, sample preparation, development of theory, and innovative applications of electrophoretic and liquid phase separations methods in the study of nucleic acids, proteins, carbohydrates natural products, pharmaceuticals, food analysis, environmental species and other compounds of importance to the life sciences. Papers in the areas of microfluidics and proteomics, which are not limited to electrophoresis-based methods, will also be accepted for publication. Contributions focused on hyphenated and omics techniques are also of interest. Proteomics is within the scope, if related to its fundamentals and new technical approaches. Proteomics applications are only considered in particular cases. Papers describing the application of standard electrophoretic methods will not be considered. Papers on nanoanalysis intended for publication in ELECTROPHORESIS should focus on one or more of the following topics: • Nanoscale electrokinetics and phenomena related to electric double layer and/or confinement in nano-sized geometry • Single cell and subcellular analysis • Nanosensors and ultrasensitive detection aspects (e.g., involving quantum dots, "nanoelectrodes" or nanospray MS) • Nanoscale/nanopore DNA sequencing (next generation sequencing) • Micro- and nanoscale sample preparation • Nanoparticles and cells analyses by dielectrophoresis • Separation-based analysis using nanoparticles, nanotubes and nanowires.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信