{"title":"From One Strand Dyed/Undyed Hair With/Without Root to Fast and Successful STR Profiling and Evaluation With Principle Component Analysis.","authors":"Gulten Rayimoglu, Fatma Cavus Yonar, Beril Anılanmert","doi":"10.1002/elps.8142","DOIUrl":null,"url":null,"abstract":"<p><p>Fallen/shed single hair shafts with/without roots can be encountered as evidence in crime scenes. Identification from hair exhibits serious difficulties, due to the low amount of DNA, PCR inhibitors, and the existence of DNA mostly in degraded forms. Exposure of hair to chemical oxidation, sunlight, etc. brings extra difficulties to DNA analysis. In single hair shafts, no satisfactory nuDNA test method that can be used both for dyed/undyed single hair shafts with/without root exists in the literature. Next-generation systems are expensive, have a labor-intensive workflow, and are not available in many forensic laboratories. Here an STR profiling method has been developed modifying an isolation kit method for an easy, successful DNA for (1) dyed/undyed single hairs with root and (2) without root from 36 individuals and compared with the unmodified method (total 432 analyzed samples). Modified silica-based isolation method, yielded 0.65-1.05 ng/µL DNA. The success of STR typing after capillary electrophoresis was 96%-98% for dyed/undyed hair with roots and 89%-93% for rootless ones, while the results for the unmodified method were 67%-82%. The results were investigated using PCA, t-test, and F-test. This protocol is simple, inexpensive, does not require automation, and can be performed using kits/equipment available in every forensic laboratory for forensic genotyping.</p>","PeriodicalId":11596,"journal":{"name":"ELECTROPHORESIS","volume":" ","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2025-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ELECTROPHORESIS","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/elps.8142","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Fallen/shed single hair shafts with/without roots can be encountered as evidence in crime scenes. Identification from hair exhibits serious difficulties, due to the low amount of DNA, PCR inhibitors, and the existence of DNA mostly in degraded forms. Exposure of hair to chemical oxidation, sunlight, etc. brings extra difficulties to DNA analysis. In single hair shafts, no satisfactory nuDNA test method that can be used both for dyed/undyed single hair shafts with/without root exists in the literature. Next-generation systems are expensive, have a labor-intensive workflow, and are not available in many forensic laboratories. Here an STR profiling method has been developed modifying an isolation kit method for an easy, successful DNA for (1) dyed/undyed single hairs with root and (2) without root from 36 individuals and compared with the unmodified method (total 432 analyzed samples). Modified silica-based isolation method, yielded 0.65-1.05 ng/µL DNA. The success of STR typing after capillary electrophoresis was 96%-98% for dyed/undyed hair with roots and 89%-93% for rootless ones, while the results for the unmodified method were 67%-82%. The results were investigated using PCA, t-test, and F-test. This protocol is simple, inexpensive, does not require automation, and can be performed using kits/equipment available in every forensic laboratory for forensic genotyping.
期刊介绍:
ELECTROPHORESIS is an international journal that publishes original manuscripts on all aspects of electrophoresis, and liquid phase separations (e.g., HPLC, micro- and nano-LC, UHPLC, micro- and nano-fluidics, liquid-phase micro-extractions, etc.).
Topics include new or improved analytical and preparative methods, sample preparation, development of theory, and innovative applications of electrophoretic and liquid phase separations methods in the study of nucleic acids, proteins, carbohydrates natural products, pharmaceuticals, food analysis, environmental species and other compounds of importance to the life sciences.
Papers in the areas of microfluidics and proteomics, which are not limited to electrophoresis-based methods, will also be accepted for publication. Contributions focused on hyphenated and omics techniques are also of interest. Proteomics is within the scope, if related to its fundamentals and new technical approaches. Proteomics applications are only considered in particular cases.
Papers describing the application of standard electrophoretic methods will not be considered.
Papers on nanoanalysis intended for publication in ELECTROPHORESIS should focus on one or more of the following topics:
• Nanoscale electrokinetics and phenomena related to electric double layer and/or confinement in nano-sized geometry
• Single cell and subcellular analysis
• Nanosensors and ultrasensitive detection aspects (e.g., involving quantum dots, "nanoelectrodes" or nanospray MS)
• Nanoscale/nanopore DNA sequencing (next generation sequencing)
• Micro- and nanoscale sample preparation
• Nanoparticles and cells analyses by dielectrophoresis
• Separation-based analysis using nanoparticles, nanotubes and nanowires.