Phase behavior and dissociation kinetics of lamins in a polymer model of progeria.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Hadiya Abdul Hameed, Jarosław Paturej, Aykut Erbaş
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Abstract

One of the key structural proteins in the eukaryotic cell nucleus is lamin. Lamins can assemble into a two-dimensional protein meshwork at the nuclear periphery, known as the nuclear lamina, which provides rigidity and shape to the nucleus. Mutations in lamin proteins that alter the structure of the nuclear lamina underlie laminopathic diseases, including Hutchinson-Gilford Progeria Syndrome (HGPS). Experiments have shown that, compared to healthy cells, lamin supramolecular structures (e.g., protofilaments) assemble into a thicker lamina in HGPS, where they form highly stable nematic microdomains at the nuclear periphery, reminiscent of liquid crystals. This significantly alters the morphological and mechanical properties of the nucleus. In this study, we investigate the aggregation of lamin fibrous structures and their dissociation kinetics from the nuclear periphery by modeling them as coarse-grained, rod-like polymer chains confined within a rigid spherical shell. Our model reproduces the formation of multidirectional nematic domains at the nuclear surface and the reduced lamin dissociation observed in HGPS nuclei by adjusting lamin concentration, lamin-lamin (head-tail), and lamin-shell association strengths. While nematic phase formation requires relatively strong lamin-shell affinity under any non-vanishing inter-lamin attraction, the thickness of the lamina layer is primarily controlled by the head-tail association strength in the model. Furthermore, the unbinding kinetics of lamin chains from the lamina exhibit a concentration-dependent facilitated dissociation, suppressed by strong intra-lamin interactions, reminiscent of diseased nuclei. Overall, our calculations reveal the physical mechanisms by which mutations affecting native lamin interactions and concentration could lead to an abnormal nuclear lamina in laminopathic diseases.

早衰症聚合物模型中层粘连蛋白的相行为和解离动力学。
核纤层蛋白是真核细胞细胞核的关键结构蛋白之一。层粘连蛋白可以在细胞核外围组装成二维蛋白质网,称为核层,它为细胞核提供刚性和形状。改变核膜结构的层状蛋白突变是层状病的基础,包括Hutchinson-Gilford早衰综合征(HGPS)。实验表明,与健康细胞相比,层蛋白超分子结构(如原丝)在HGPS中聚集成更厚的层,在核周围形成高度稳定的向列微域,让人联想到液晶。这显著地改变了细胞核的形态和力学特性。在这项研究中,我们研究了核纤层纤维结构的聚集和它们从核外围的解离动力学,通过将它们建模为被限制在刚性球形壳内的粗粒棒状聚合物链。我们的模型再现了核表面多向列结构域的形成,并通过调整核层蛋白浓度、核层蛋白-核层蛋白(正反)和核层蛋白-壳的结合强度,在HGPS核中观察到核层蛋白解离的减少。在任何不消失的层间吸引下,向列相的形成需要相对强的层-壳亲合力,而在模型中,层的厚度主要由正尾关联强度控制。此外,层状蛋白链的解离动力学表现出浓度依赖的易解离,被强烈的层状蛋白相互作用抑制,使人联想到患病的细胞核。总的来说,我们的计算揭示了影响天然层状蛋白相互作用和浓度的突变可能导致层状病中核层异常的物理机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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