A perspective marking 20 years of using permutationally invariant polynomials for molecular potentials.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Joel M Bowman, Chen Qu, Riccardo Conte, Apurba Nandi, Paul L Houston, Qi Yu
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引用次数: 0

Abstract

This Perspective is focused on permutationally invariant polynomials (PIPs). Since their introduction in 2004 and first use in developing a fully permutationally invariant potential for the highly fluxional cation CH5+, PIPs have found widespread use in developing machine learned potentials (MLPs) for isolated molecules, chemical reactions, clusters, condensed phase, and materials. More than 100 potentials have been reported using PIPs. The popularity of PIPs for MLPs stems from their fundamental property of being invariant with respect to permutations of like atoms; this is a fundamental property of potential energy surfaces. This is achieved using global descriptors and, thus, without using an atom-centered approach (which is manifestly fully permutationally invariant). PIPs have been used directly for linear regression fitting of electronic energies and gradients for complex energy landscapes to chemical reactions with numerous product channels. PIPs have also been used as inputs to neural network and Gaussian process regression methods and in many-body (atom-centered, water monomer, etc.) applications, notably for gold standard potentials for water. Here, we focus on the progress and usage of PIPs since 2018, when the last review of PIPs was done by our group.

20年来使用排列不变多项式计算分子电位的展望。
本观点的重点是置换不变多项式(PIPs)。自2004年引入并首次用于开发高通量阳离子CH5+的完全排列不变电位以来,pip已被广泛用于开发孤立分子,化学反应,簇,凝聚相和材料的机器学习电位(mlp)。据报道,使用pip的电位超过100个。mpp的流行源于它们对类似原子排列的不变性这一基本性质;这是势能面的基本性质。这是使用全局描述符实现的,因此,不使用以原子为中心的方法(显然是完全排列不变的)。pip已被直接用于电子能量和梯度的线性回归拟合,用于具有众多产品通道的化学反应的复杂能量景观。pip也被用作神经网络和高斯过程回归方法的输入,以及在多体(原子中心,水单体等)应用中,特别是用于水的金标准电位。在这里,我们重点关注自2018年以来pip的进展和使用情况,当时我们小组完成了pip的最后一次审查。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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