Francesco Zaccaria, Alceo Macchioni, Cristiano Zuccaccia
{"title":"Accurate Determination of Molecular Sizes of a Solute in Water From its Translational Self-Diffusion Coefficient","authors":"Francesco Zaccaria, Alceo Macchioni, Cristiano Zuccaccia","doi":"10.1002/cmtd.202400063","DOIUrl":null,"url":null,"abstract":"<p>Determining accurate molecular dimensions in water, from measured translational self-diffusion coefficients (<i>D</i><sub>t</sub>), is extremely important in biochemistry, supramolecular chemistry, organometallic chemistry and beyond, but it still represents a big challenge especially for small and medium-sized molecules. Indeed, current semiempirical adaptations of the Stokes-Einstein equation, which allow accurate determination of molecular size of solutes in organic solvents, proved inadequate for aqueous systems. To overcome such a major limitation, herein, we introduce a novel approach that unlocks the quantitative interpretation of <i>D</i><sub>t</sub> in water. By analyzing ~70 diverse molecules with volumes ranging from 10<sup>1</sup> Å<sup>3</sup> to 10<sup>3</sup> Å<sup>3</sup>, and selecting the partial molar radius (<i>r</i><sub>M</sub>) as a reliable proxy for the hydrodynamic radius (<i>r</i><sub>H</sub>), we derived a semiempirical equation that enables accurate determination of hydrodynamic volume (<i>V</i><sub>H</sub>) of solutes in aqueous solutions, effectively accounting for the distinctive hydrogen-bonding properties of water. This approach fills a crucial gap, enhancing precise molecular characterization of polar and non-polar solutes in water.</p>","PeriodicalId":72562,"journal":{"name":"Chemistry methods : new approaches to solving problems in chemistry","volume":"5 5","pages":""},"PeriodicalIF":6.1000,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/cmtd.202400063","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemistry methods : new approaches to solving problems in chemistry","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/cmtd.202400063","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Determining accurate molecular dimensions in water, from measured translational self-diffusion coefficients (Dt), is extremely important in biochemistry, supramolecular chemistry, organometallic chemistry and beyond, but it still represents a big challenge especially for small and medium-sized molecules. Indeed, current semiempirical adaptations of the Stokes-Einstein equation, which allow accurate determination of molecular size of solutes in organic solvents, proved inadequate for aqueous systems. To overcome such a major limitation, herein, we introduce a novel approach that unlocks the quantitative interpretation of Dt in water. By analyzing ~70 diverse molecules with volumes ranging from 101 Å3 to 103 Å3, and selecting the partial molar radius (rM) as a reliable proxy for the hydrodynamic radius (rH), we derived a semiempirical equation that enables accurate determination of hydrodynamic volume (VH) of solutes in aqueous solutions, effectively accounting for the distinctive hydrogen-bonding properties of water. This approach fills a crucial gap, enhancing precise molecular characterization of polar and non-polar solutes in water.