IR-MBiTCN: Computational prediction of insulin receptor using deep learning: A multi-information fusion approach with multiscale bidirectional temporal convolutional network

IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Farman Ali , Atef Masmoudi , Tamim Alkhalifah , Fahad Alturise , Wajdi Alghamdi , Majdi Khalid
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引用次数: 0

Abstract

The insulin receptor (IR) is a transmembrane protein that controls glucose homeostasis and is highly associated with chronic diseases including cancer and neurological. Traditional experimental methods have provided essential insights into IR structure and function, but they are constrained by time, cost, and scalability. To address these limitations, we present a computational technique for IR prediction based on deep learning and multi-information fusion. First, we built sequence-based training and testing datasets. Second, the compositional, word embedding, and evolutionary features were retrieved using the Weighted-Group Dipeptide Composition (W-GDPC), FastText, and Bi-Block-Position Specific Scoring Matrix (BB-PSSM), respectively. Third, we use compositional, word embedding, and evolutionary features to generate multi-perspective fused features (MPFF). Fourth, the Multiscale Bidirectional Temporal Convolutional Network (MBiTCN) is used to train the model to process features at multiscale and analyze sequences in both forward and backward directions. The proposed approach (IR-MBiTCN) outperforms competing deep learning (DL) and machine learning (ML)-based models on training and testing datasets, achieving 83.50 % and 79.43 % accuracy, respectively. This study represents a pioneering use of computational methodology in IR prediction, providing a scalable, efficient alternative to experimental procedures and paving the way for advances in chronic disease therapy and drug discovery.
基于深度学习的胰岛素受体计算预测:基于多尺度双向时间卷积网络的多信息融合方法
胰岛素受体(IR)是一种控制葡萄糖稳态的跨膜蛋白,与包括癌症和神经系统疾病在内的慢性疾病高度相关。传统的实验方法提供了对红外光谱结构和功能的基本见解,但它们受到时间、成本和可扩展性的限制。为了解决这些限制,我们提出了一种基于深度学习和多信息融合的红外预测计算技术。首先,我们建立了基于序列的训练和测试数据集。其次,分别使用加权组二肽组成(W-GDPC)、FastText和双块位置特定评分矩阵(BB-PSSM)检索组合特征、词嵌入特征和进化特征。第三,利用组合特征、词嵌入特征和进化特征生成多视角融合特征(MPFF)。第四,利用多尺度双向时间卷积网络(MBiTCN)对模型进行多尺度特征处理和序列正反向分析。本文提出的方法(IR-MBiTCN)在训练和测试数据集上优于基于深度学习(DL)和机器学习(ML)的竞争模型,分别达到83.50%和79.43%的准确率。这项研究代表了计算方法在IR预测中的开创性应用,为实验程序提供了一种可扩展的、有效的替代方案,并为慢性病治疗和药物发现的进步铺平了道路。
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来源期刊
International Journal of Biological Macromolecules
International Journal of Biological Macromolecules 生物-生化与分子生物学
CiteScore
13.70
自引率
9.80%
发文量
2728
审稿时长
64 days
期刊介绍: The International Journal of Biological Macromolecules is a well-established international journal dedicated to research on the chemical and biological aspects of natural macromolecules. Focusing on proteins, macromolecular carbohydrates, glycoproteins, proteoglycans, lignins, biological poly-acids, and nucleic acids, the journal presents the latest findings in molecular structure, properties, biological activities, interactions, modifications, and functional properties. Papers must offer new and novel insights, encompassing related model systems, structural conformational studies, theoretical developments, and analytical techniques. Each paper is required to primarily focus on at least one named biological macromolecule, reflected in the title, abstract, and text.
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