Detection and Tracking of SARS-CoV-2 Lineages through National Wastewater Surveillance System Pathogen Genomics

IF 7.2 2区医学 Q1 IMMUNOLOGY

Emerging Infectious Diseases Pub Date : 2025-05-02 DOI:10.3201/eid3113.241411

Dorian J. Feistel, Rory Welsh, Jeffrey Mercante, Miguella Mark-Carew, Jason Caravas, Arun Boddapati, Samantha Sevilla, Matthew H. Seabolt, Dhwani Batra, Suchitra Chavan, Shatavia Morrison, Jesse Yoder, Hannah Long, Satvik Mishra, Benjamin Lorentz, Andi Dhroso, Iryna V. Goraichuk, Seonghye Jeon, Daniel M. Cornforth

引用次数: 0

Abstract

We conducted retrospective analysis of the emergence of the SARS-CoV-2 JN.1 variant in US wastewater during November 2023–July 2024 using Aquascope, a bioinformatics pipeline for the National Wastewater Surveillance System. This study highlights the value of open-source bioinformatics tools in tracking pathogen variants for public health monitoring.

查看原文本刊更多论文

通过国家污水监测系统病原体基因组学检测和跟踪SARS-CoV-2谱系

我们使用Aquascope（国家废水监测系统的生物信息学管道）对2023年11月至2024年7月期间美国废水中出现的SARS-CoV-2 jn1变体进行了回顾性分析。这项研究强调了开源生物信息学工具在跟踪病原体变异以进行公共卫生监测方面的价值。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

求助全文

约1分钟内获得全文求助全文

来源期刊

Emerging Infectious Diseases 医学-传染病学

CiteScore

17.30

自引率

1.70%

发文量

505

审稿时长

1 months

期刊介绍： Emerging Infectious Diseases is a monthly open access journal published by the Centers for Disease Control and Prevention. The primary goal of this peer-reviewed journal is to advance the global recognition of both new and reemerging infectious diseases, while also enhancing our understanding of the underlying factors that contribute to disease emergence, prevention, and elimination. Targeted towards professionals in the field of infectious diseases and related sciences, the journal encourages diverse contributions from experts in academic research, industry, clinical practice, public health, as well as specialists in economics, social sciences, and other relevant disciplines. By fostering a collaborative approach, Emerging Infectious Diseases aims to facilitate interdisciplinary dialogue and address the multifaceted challenges posed by infectious diseases.