Evaluation of Thermodynamic Averages in a Phase Space with Overlapping Subdomains

IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL
Longyuan Zhang,  and , J. R. Schmidt*, 
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引用次数: 0

Abstract

We demonstrate a simple methodology for accurately and efficiently evaluating the ensemble average of thermodynamic observables across a phase space divided into arbitrary, potentially overlapping, subdomains defined, for example, via corresponding collective variables or descriptors. By dividing the phase space in this manner, the challenging task of sampling the complete phase space is rigorously transformed into relatively easier sampling over subdomains, each of which can be sampled independently and without regard to their mutual overlap. Accurate thermal averages of observables over the complete phase space are then obtained by sampling over these subdomains and properly reweighting them based on their degree of mutual overlap at each point in phase space. To demonstrate the efficacy of our approach, we examine applications to simple Lennard-Jones clusters and subsequently to ion clusters in aqueous solution, where the various cluster connectivities and morphologies provide a natural division of phase space. More generally, we anticipate that our approach holds promise for a wide range of applications, from nucleation free energy surfaces to the thermodynamics of protein conformational changes, providing a natural complement to traditional enhanced sampling methods.

Abstract Image

具有重叠子域的相空间中热力学平均的评价
我们展示了一种简单的方法,用于准确有效地评估跨相空间的热力学可观测值的集合平均值,该相空间分为任意的,可能重叠的,定义的子域,例如,通过相应的集体变量或描述符。通过以这种方式划分相空间,对整个相空间进行采样的挑战性任务被严格转化为相对容易的子域采样,每个子域都可以独立采样,而不考虑它们的相互重叠。然后,通过对这些子域进行采样,并根据它们在相空间中每个点的相互重叠程度适当地重新加权,获得完整相空间中观测值的精确热平均。为了证明我们的方法的有效性,我们研究了简单的Lennard-Jones团簇和随后的水溶液中的离子团簇的应用,其中各种团簇连接和形态提供了相空间的自然划分。更一般地说,我们预计我们的方法具有广泛的应用前景,从成核自由能表面到蛋白质构象变化的热力学,为传统的增强采样方法提供自然补充。
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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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