The PteridoPortal: A publicly accessible collection of over three million records of extant and extinct pteridophytes

IF 2.7 3区 生物学 Q2 PLANT SCIENCES
Carl J. Rothfels, Jaemin Lee, Michael A. Sundue, Alan R. Smith, Amy Kasameyer, Joyce Gross, Garth Holman, Shusheng Hu, Matt von Konrat, Emily B. Sessa, Kimberly Watson, Alan Weakley, Libing Zhang, Patricia Gensel, Michael Hassler, Katelin D. Pearson, Ed Gilbert, Robyn J. Burnham, Richard K. Rabeler, Patrick Sweeney, Alejandra Vasco, Weston Testo, David E. Giblin, Stefanie M. Ickert-Bond, Margaret Landis, Melanie Link-Perez, Tatyana Livshultz, Ian Miller, Christopher Neefus, Kathleen Pigg, Mitchell Power, Alan Prather, Tiana Rehman, Lena Struwe, Michael Vincent, George Weiblen, Timothy Whitfeld, Michael D. Windham, George Yatskievych, Aaron Liston, Elizabeth Makings, Kathleen M. Pryer, Caroline Strömberg, Eve Atri, Jason Best, Ian Glasspool, Layne Huiet, Elizabeth Johnson, Megan R. King, Az Klymiuk, Richard Lupia, Lucas C. Majure, Carol Ann McCormick, Richard McCourt, Shanna Oberreiter, Kent D. Perkins, Yarency Rodriguez, Chelsea Smith, James Solomon, Jordan Teisher, Donna Ford-Werntz, Petra Fuehrding-Potschkat, Holly Little, Tom A. Ranker, Eric Schuettpelz, Carrie M. Tribble, Diane M. Erwin, Cindy V. Looy
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引用次数: 0

Abstract

Premise

Pteridophytes—vascular land plants that disperse by spores—are a powerful system for studying plant evolution, particularly with respect to the impact of abiotic factors on evolutionary trajectories through deep time. However, our ability to use pteridophytes to investigate such questions—or to capitalize on the ecological and conservation-related applications of the group—has been impaired by the relative isolation of the neo- and paleobotanical research communities and by the absence of large-scale biodiversity data sources.

Methods

Here we present the Pteridophyte Collections Consortium (PCC), an interdisciplinary community uniting neo- and paleobotanists, and the associated PteridoPortal, a publicly accessible online portal that serves over three million pteridophyte records, including herbarium specimens, paleontological museum specimens, and iNaturalist observations. We demonstrate the utility of the PteridoPortal through discussion of three example PteridoPortal-enabled research projects.

Results

The data within the PteridoPortal are global in scope and are queryable in a flexible manner. The PteridoPortal contains a taxonomic thesaurus (a digital version of a Linnaean classification) that includes both extant and extinct pteridophytes in a common phylogenetic framework. The PteridoPortal allows applications such as greatly accelerated classic floristics, entirely new “next-generation” floristic approaches, and the study of environmentally mediated evolution of functional morphology across deep time.

Discussion

The PCC and PteridoPortal provide a comprehensive resource enabling novel research into plant evolution, ecology, and conservation across deep time, facilitating rapid floristic analyses and other biodiversity-related investigations, and providing new opportunities for education and community engagement.

Abstract Image

pteridportal:一个公开的收集超过三百万现存和灭绝的蕨类植物的记录
蕨类植物是一种通过孢子传播的维管束陆地植物,是研究植物进化的有力系统,特别是研究非生物因素对长时间进化轨迹的影响。然而,我们利用蕨类植物来调查这些问题的能力,或者利用这一群体的生态和保护相关应用的能力,由于新植物和古植物研究界的相对孤立以及缺乏大规模的生物多样性数据源而受到损害。在这里,我们介绍了蕨类植物收藏联盟(PCC),一个由新植物学家和古植物学家组成的跨学科社区,以及相关的pteridportal,一个公开访问的在线门户网站,提供超过300万份蕨类记录,包括标本馆标本、古生物博物馆标本和自然学家的观察结果。我们通过讨论三个支持pteridportal的示例研究项目来演示pteridportal的实用性。结果pteridportal中的数据是全局范围的,并且可以灵活地查询。pteridportal包含一个分类词典(林奈分类的数字版本),在一个共同的系统发育框架中包括现存和灭绝的翼植物。pteridportal允许应用程序,如大大加快经典植物区系,全新的“下一代”植物区系方法,以及研究环境介导的功能形态的进化跨越时间。PCC和pteridportal提供了一个全面的资源,可以对植物进化、生态学和保护进行深入的研究,促进快速的植物区系分析和其他生物多样性相关的调查,并为教育和社区参与提供新的机会。
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来源期刊
CiteScore
7.30
自引率
0.00%
发文量
50
审稿时长
12 weeks
期刊介绍: Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences. APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.
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