Carl J. Rothfels, Jaemin Lee, Michael A. Sundue, Alan R. Smith, Amy Kasameyer, Joyce Gross, Garth Holman, Shusheng Hu, Matt von Konrat, Emily B. Sessa, Kimberly Watson, Alan Weakley, Libing Zhang, Patricia Gensel, Michael Hassler, Katelin D. Pearson, Ed Gilbert, Robyn J. Burnham, Richard K. Rabeler, Patrick Sweeney, Alejandra Vasco, Weston Testo, David E. Giblin, Stefanie M. Ickert-Bond, Margaret Landis, Melanie Link-Perez, Tatyana Livshultz, Ian Miller, Christopher Neefus, Kathleen Pigg, Mitchell Power, Alan Prather, Tiana Rehman, Lena Struwe, Michael Vincent, George Weiblen, Timothy Whitfeld, Michael D. Windham, George Yatskievych, Aaron Liston, Elizabeth Makings, Kathleen M. Pryer, Caroline Strömberg, Eve Atri, Jason Best, Ian Glasspool, Layne Huiet, Elizabeth Johnson, Megan R. King, Az Klymiuk, Richard Lupia, Lucas C. Majure, Carol Ann McCormick, Richard McCourt, Shanna Oberreiter, Kent D. Perkins, Yarency Rodriguez, Chelsea Smith, James Solomon, Jordan Teisher, Donna Ford-Werntz, Petra Fuehrding-Potschkat, Holly Little, Tom A. Ranker, Eric Schuettpelz, Carrie M. Tribble, Diane M. Erwin, Cindy V. Looy
{"title":"The PteridoPortal: A publicly accessible collection of over three million records of extant and extinct pteridophytes","authors":"Carl J. Rothfels, Jaemin Lee, Michael A. Sundue, Alan R. Smith, Amy Kasameyer, Joyce Gross, Garth Holman, Shusheng Hu, Matt von Konrat, Emily B. Sessa, Kimberly Watson, Alan Weakley, Libing Zhang, Patricia Gensel, Michael Hassler, Katelin D. Pearson, Ed Gilbert, Robyn J. Burnham, Richard K. Rabeler, Patrick Sweeney, Alejandra Vasco, Weston Testo, David E. Giblin, Stefanie M. Ickert-Bond, Margaret Landis, Melanie Link-Perez, Tatyana Livshultz, Ian Miller, Christopher Neefus, Kathleen Pigg, Mitchell Power, Alan Prather, Tiana Rehman, Lena Struwe, Michael Vincent, George Weiblen, Timothy Whitfeld, Michael D. Windham, George Yatskievych, Aaron Liston, Elizabeth Makings, Kathleen M. Pryer, Caroline Strömberg, Eve Atri, Jason Best, Ian Glasspool, Layne Huiet, Elizabeth Johnson, Megan R. King, Az Klymiuk, Richard Lupia, Lucas C. Majure, Carol Ann McCormick, Richard McCourt, Shanna Oberreiter, Kent D. Perkins, Yarency Rodriguez, Chelsea Smith, James Solomon, Jordan Teisher, Donna Ford-Werntz, Petra Fuehrding-Potschkat, Holly Little, Tom A. Ranker, Eric Schuettpelz, Carrie M. Tribble, Diane M. Erwin, Cindy V. Looy","doi":"10.1002/aps3.70003","DOIUrl":null,"url":null,"abstract":"<div>\n \n \n <section>\n \n <h3> Premise</h3>\n \n <p>Pteridophytes—vascular land plants that disperse by spores—are a powerful system for studying plant evolution, particularly with respect to the impact of abiotic factors on evolutionary trajectories through deep time. However, our ability to use pteridophytes to investigate such questions—or to capitalize on the ecological and conservation-related applications of the group—has been impaired by the relative isolation of the neo- and paleobotanical research communities and by the absence of large-scale biodiversity data sources.</p>\n </section>\n \n <section>\n \n <h3> Methods</h3>\n \n <p>Here we present the Pteridophyte Collections Consortium (PCC), an interdisciplinary community uniting neo- and paleobotanists, and the associated PteridoPortal, a publicly accessible online portal that serves over three million pteridophyte records, including herbarium specimens, paleontological museum specimens, and iNaturalist observations. We demonstrate the utility of the PteridoPortal through discussion of three example PteridoPortal-enabled research projects.</p>\n </section>\n \n <section>\n \n <h3> Results</h3>\n \n <p>The data within the PteridoPortal are global in scope and are queryable in a flexible manner. The PteridoPortal contains a taxonomic thesaurus (a digital version of a Linnaean classification) that includes both extant and extinct pteridophytes in a common phylogenetic framework. The PteridoPortal allows applications such as greatly accelerated classic floristics, entirely new “next-generation” floristic approaches, and the study of environmentally mediated evolution of functional morphology across deep time.</p>\n </section>\n \n <section>\n \n <h3> Discussion</h3>\n \n <p>The PCC and PteridoPortal provide a comprehensive resource enabling novel research into plant evolution, ecology, and conservation across deep time, facilitating rapid floristic analyses and other biodiversity-related investigations, and providing new opportunities for education and community engagement.</p>\n </section>\n </div>","PeriodicalId":8022,"journal":{"name":"Applications in Plant Sciences","volume":"13 2","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aps3.70003","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Applications in Plant Sciences","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/aps3.70003","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Premise
Pteridophytes—vascular land plants that disperse by spores—are a powerful system for studying plant evolution, particularly with respect to the impact of abiotic factors on evolutionary trajectories through deep time. However, our ability to use pteridophytes to investigate such questions—or to capitalize on the ecological and conservation-related applications of the group—has been impaired by the relative isolation of the neo- and paleobotanical research communities and by the absence of large-scale biodiversity data sources.
Methods
Here we present the Pteridophyte Collections Consortium (PCC), an interdisciplinary community uniting neo- and paleobotanists, and the associated PteridoPortal, a publicly accessible online portal that serves over three million pteridophyte records, including herbarium specimens, paleontological museum specimens, and iNaturalist observations. We demonstrate the utility of the PteridoPortal through discussion of three example PteridoPortal-enabled research projects.
Results
The data within the PteridoPortal are global in scope and are queryable in a flexible manner. The PteridoPortal contains a taxonomic thesaurus (a digital version of a Linnaean classification) that includes both extant and extinct pteridophytes in a common phylogenetic framework. The PteridoPortal allows applications such as greatly accelerated classic floristics, entirely new “next-generation” floristic approaches, and the study of environmentally mediated evolution of functional morphology across deep time.
Discussion
The PCC and PteridoPortal provide a comprehensive resource enabling novel research into plant evolution, ecology, and conservation across deep time, facilitating rapid floristic analyses and other biodiversity-related investigations, and providing new opportunities for education and community engagement.
期刊介绍:
Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences.
APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.