Genomic characterization of a novel gammapartitivirus infecting the phytopathogenic fungus Colletotrichum cliviicola

IF 2.5 4区 医学 Q3 VIROLOGY
Ya Rong Wang, Jie Zhong, Zhijuan Yang, Yi Chen, Jia En Su
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Abstract

In this study, we isolated a novel double-stranded RNA (dsRNA) mycovirus from the phytopathogenic fungus Colletotrichum cliviicola, designated as "Colletotrichum cliviicola partitivirus 1" (CcPV1). The complete genome of CcPV1 comprises two dsRNA fragments, referred to as dsRNA1 and dsRNA2, which are 1,756 bp and 1,485 bp in length, respectively. Each dsRNA segment contains an open reading frame (ORF), with the larger ORF1 in dsRNA 1 encoding the viral RNA-dependent RNA polymerase (RdRp) and the smaller ORF2 in dsRNA 2 encoding the capsid protein (CP). Sequence comparisons revealed that the RdRp of CcPV1 shares the highest amino acid sequence identity (76.35%) with the RdRp of Nigrospora sphaerica partitivirus 1 (NsPV1). Phylogenetic analysis based on both RdRp and CP sequences indicated that CcPV1 is a member of the genus Gammapartitivirus of the family Partitiviridae. This is the first report of a gammapartitivirus in C. cliviicola.

一种感染植物病原菌炭疽菌的新型γ - artitivirus的基因组特征
本研究从植物病原真菌Colletotrichum cliviicola中分离到一种新的双链RNA (dsRNA)分枝病毒,命名为“Colletotrichum cliviicola partitivirus 1”(CcPV1)。CcPV1的全基因组包含两个dsRNA片段,分别为dsRNA1和dsRNA2,长度分别为1756 bp和1485 bp。每个dsRNA片段包含一个开放阅读框(ORF), dsRNA 1中较大的ORF1编码病毒RNA依赖RNA聚合酶(RdRp), dsRNA 2中较小的ORF2编码衣壳蛋白(CP)。序列比较表明,CcPV1的RdRp与球形黑孢子虫部分病毒1 (NsPV1)的RdRp具有最高的氨基酸序列一致性(76.35%)。基于RdRp和CP序列的系统发育分析表明,CcPV1是Partitiviridae科Gammapartitivirus属成员。这是首次报道的C. cliviicola γ - artitivirus。
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来源期刊
Archives of Virology
Archives of Virology 医学-病毒学
CiteScore
5.10
自引率
7.40%
发文量
324
审稿时长
4.5 months
期刊介绍: Archives of Virology publishes original contributions from all branches of research on viruses, virus-like agents, and virus infections of humans, animals, plants, insects, and bacteria. Coverage spans a broad spectrum of topics, from descriptions of newly discovered viruses, to studies of virus structure, composition, and genetics, to studies of virus interactions with host cells, organisms and populations. Studies employ molecular biologic, molecular genetics, and current immunologic and epidemiologic approaches. Contents include studies on the molecular pathogenesis, pathophysiology, and genetics of virus infections in individual hosts, and studies on the molecular epidemiology of virus infections in populations. Also included are studies involving applied research such as diagnostic technology development, monoclonal antibody panel development, vaccine development, and antiviral drug development.Archives of Virology wishes to publish obituaries of recently deceased well-known virologists and leading figures in virology.
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