The perils of naïve use of open-source data: A comment on “Spatiotemporal distribution of sudden oak death in the US and Europe”

IF 5.6 1区 农林科学 Q1 AGRONOMY
Susan J. Frankel , Matteo Garbelotto , Chris Jones , Niklaus J. Grünwald , Robert C. Venette
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引用次数: 0

Abstract

Kang et al. (2024) present a spatiotemporal analysis of Phytophthora ramorum outbreaks from 2005 to 2021 in the United States and Europe. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which led the authors to select improper methods for their analysis. The open-source data analyzed does not include sampling over all seasons of the year. Sampling is primarily conducted in the spring which makes the data unbalanced and inappropriate for examination of seasonality without transformation. Differences in characteristics, and significant driving factors (e.g., relative humidity) between the locations where infection clusters occur, irrigated nurseries with complex sources of inoculum and modified environments versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread. Additional occurrence records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis. Clear descriptive language and proper study design are required to understand how environmental conditions influence P. ramorum establishment and spread so they can inform forest management and regulations to protect the resources at risk. An understanding of the temporal and spatial dynamics of Sudden Oak Death, Sudden Larch Death, Ramorum Blight and other diseases caused by P. ramorum is critical to serve as the basis for management strategies to limit losses and pathogen spread. The use of publicly available data presents specific challenges that need to be considered in spatiotemporal analyses to obtain meaningful results.
naïve使用开源数据的危险:对“美国和欧洲橡树猝死的时空分布”的评论
Kang等人(2024)对2005年至2021年美国和欧洲的疫霉爆发进行了时空分析。然而,由于对所分析的病理系统缺乏了解,导致作者选择了不正确的分析方法,因此分析和结论存在缺陷。分析的开源数据不包括一年中所有季节的采样。采样主要在春季进行,这使得数据不平衡,不适合未经转换的季节性检查。在分析湿度条件与病原体传播之间的关系时,没有考虑到感染聚集发生地点、具有复杂接种源和改良环境的灌溉苗圃与仅受环境条件影响的天然林之间的特征差异和重要驱动因素(例如相对湿度)。在美国和英国也有其他的发生记录,但它们没有包括在分析中。需要清晰的描述性语言和适当的研究设计,以了解环境条件如何影响黑桫椤的建立和传播,从而为森林管理和法规提供信息,以保护面临风险的资源。了解由黑桫椤(P. Ramorum)引起的栎树猝死病、落叶松猝死病、黑桫椤枯萎病等病害的时空动态,对于制定有效的管理策略、控制病害损失和控制病原菌传播具有重要意义。为了获得有意义的结果,在时空分析中需要考虑使用公开可用数据的具体挑战。
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来源期刊
CiteScore
10.30
自引率
9.70%
发文量
415
审稿时长
69 days
期刊介绍: Agricultural and Forest Meteorology is an international journal for the publication of original articles and reviews on the inter-relationship between meteorology, agriculture, forestry, and natural ecosystems. Emphasis is on basic and applied scientific research relevant to practical problems in the field of plant and soil sciences, ecology and biogeochemistry as affected by weather as well as climate variability and change. Theoretical models should be tested against experimental data. Articles must appeal to an international audience. Special issues devoted to single topics are also published. Typical topics include canopy micrometeorology (e.g. canopy radiation transfer, turbulence near the ground, evapotranspiration, energy balance, fluxes of trace gases), micrometeorological instrumentation (e.g., sensors for trace gases, flux measurement instruments, radiation measurement techniques), aerobiology (e.g. the dispersion of pollen, spores, insects and pesticides), biometeorology (e.g. the effect of weather and climate on plant distribution, crop yield, water-use efficiency, and plant phenology), forest-fire/weather interactions, and feedbacks from vegetation to weather and the climate system.
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