Induction of zinc conjugated with Doxorubicin for the prevention of aggregating β-catenin in the Wnt signaling pathway investigated through computational approaches.

IF 2.9 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2025-04-07 eCollection Date: 2025-01-01 DOI:10.1371/journal.pone.0316665
Gomathi Rajagopal, Balajee Ramachandran, Paradesi Deivanayagam, Venkatesan Srinivasadesikan, Boomi Pandi, Saravanan Muthupandian, Rajamanikandan Sundarraj, Goyitom Gebremedhn Gebru
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引用次数: 0

Abstract

Canonical Wnt signaling plays a key role in tumor cell proliferation which correlates with the accumulation of β-catenin resulting inactivation of the network of targets such as GSK3β, Axin, CK1. Uncontrolled expression of β-catenin leads to different types of cancers and other diseases such as sarcoma and mesenchymal tumor formation. However, β-catenin is an attractive target for cervical cancer. In the present study, the compounds such as Doxorubicin and Zinc conjugated with Doxorubicin were screened against β-catenin using Molecular Docking, Molecular Dynamics Simulation, MM/GBSA, and DFT approaches to explore their insights. The study further demonstrated that the binding energy of Zn conjugated with Doxorubicin has shown -7.2 kcal/mol and Doxorubicin registers -5.9 kcal/mol against β-catenin. The disruption between the β-catenin/Tcf-4 complex was observed through the Zinc-Doxorubicin complex, both the proteins are separated about 12 Å. The Zn-Doxorubicin was stabilized with the hydrophobic residues such as Val349 of β-catenin and Phe21 of Tcf-4. The DFT analysis using the B3LYP/6-31g(d,p) method explores that Zn-doxorubicin in complex with the binding site residues has shown the HOMO-LUMO gap of 2.55 eV. The binding free energy calculations exhibit the Zn conjugated Doxorubicin favors in the study by showing ~ 3 kcal/mol difference with Doxorubicin. The Zn-conjugated Doxorubicin will be discussed in the context of cervical cancer with the hope of improving drug efficacy and reducing toxicities for the betterment of the patient's quality of life.

通过计算方法研究了锌与阿霉素偶联对Wnt信号通路中β-catenin聚集的诱导作用。
典型的Wnt信号在肿瘤细胞增殖中起着关键作用,这与β-catenin的积累导致GSK3β、Axin、CK1等靶标网络失活有关。不受控制的β-catenin表达导致不同类型的癌症和其他疾病,如肉瘤和间质肿瘤的形成。然而,β-连环蛋白是宫颈癌的一个有吸引力的靶点。本研究采用分子对接、分子动力学模拟、MM/GBSA和DFT等方法对阿霉素和锌偶联的化合物进行β-catenin的筛选,探讨其对β-catenin的影响。研究进一步表明,锌与阿霉素偶联的结合能为-7.2 kcal/mol,阿霉素对β-catenin的结合能为-5.9 kcal/mol。通过锌-阿霉素复合物观察到β-catenin/Tcf-4复合物之间的断裂,两个蛋白在12 Å左右分离。用β-catenin的Val349和Tcf-4的Phe21等疏水残基稳定zn -阿霉素。采用B3LYP/6-31g(d,p)方法进行DFT分析发现,结合位点残基的锌-阿霉素配合物显示出2.55 eV的HOMO-LUMO间隙。结合自由能计算结果表明,锌共轭阿霉素与阿霉素的结合自由能相差约3千卡/摩尔。锌偶联阿霉素将在宫颈癌的背景下进行讨论,以期提高药物疗效,减少毒性,改善患者的生活质量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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