Transfer learning and data augmentation for glucose concentration prediction from colorimetric biosensor images

IF 5.3 2区 化学 Q1 CHEMISTRY, ANALYTICAL
Ga-Young Choi, Na-Ri Kim, Da-Young Yu, Taeha Lee, Gyudo Lee, Han-Jeong Hwang
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引用次数: 0

Abstract

A deep learning algorithm is introduced to accurately predict glucose concentrations using colorimetric paper sensor (CPS) images. We used an image dataset from CPS treated with five different glucose concentrations as input for deep learning models. Transfer learning was performed by modifying four established deep learning models—ResNet50, ResNet101, GoogLeNet, and VGG-19—to predict glucose concentrations. Additionally, we attempted to alleviate the challenge of requiring the large amount of training data by applying data augmentation techniques. Prediction performance was evaluated using coefficients of determination (R2), root mean squared error (RMSE), and relative-RMSE (rRMSE). GoogLeNet showed the highest coefficient of determination (R2 = 0.994) and significantly lower prediction errors across all concentration levels compared with a traditional machine learning approach (two-sample t-test, p < 0.001). When data augmentation was performed using 20% of the entire training dataset, the mean prediction error was comparable to that of the original entire training dataset. We presented a novel approach for glucose concentration prediction using deep learning techniques based on transfer learning and data augmentation with image data. Our method uses images from CPS as input and eliminates the need for separate feature extraction, simplifying the prediction process.

Graphical Abstract

Abstract Image

从比色生物传感器图像中预测葡萄糖浓度的迁移学习和数据增强
介绍了一种深度学习算法,利用比色纸传感器(CPS)图像准确预测葡萄糖浓度。我们使用来自CPS的经过五种不同葡萄糖浓度处理的图像数据集作为深度学习模型的输入。通过修改四个已建立的深度学习模型(resnet50、ResNet101、GoogLeNet和vgg -19)来进行迁移学习,以预测葡萄糖浓度。此外,我们试图通过应用数据增强技术来缓解需要大量训练数据的挑战。采用决定系数(R2)、均方根误差(RMSE)和相对RMSE (rRMSE)评价预测效果。与传统的机器学习方法相比,GoogLeNet在所有浓度水平上的决定系数最高(R2 = 0.994),预测误差显著降低(双样本t检验,p < 0.001)。当使用整个训练数据集的20%进行数据增强时,平均预测误差与原始整个训练数据集的平均预测误差相当。我们提出了一种利用基于迁移学习和图像数据增强的深度学习技术预测葡萄糖浓度的新方法。我们的方法使用来自CPS的图像作为输入,消除了单独提取特征的需要,简化了预测过程。图形抽象
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来源期刊
Microchimica Acta
Microchimica Acta 化学-分析化学
CiteScore
9.80
自引率
5.30%
发文量
410
审稿时长
2.7 months
期刊介绍: As a peer-reviewed journal for analytical sciences and technologies on the micro- and nanoscale, Microchimica Acta has established itself as a premier forum for truly novel approaches in chemical and biochemical analysis. Coverage includes methods and devices that provide expedient solutions to the most contemporary demands in this area. Examples are point-of-care technologies, wearable (bio)sensors, in-vivo-monitoring, micro/nanomotors and materials based on synthetic biology as well as biomedical imaging and targeting.
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