Meta-analysis of grapevine microbiota: Insights into the influence of cultivars, plant parts, geography, and vineyard practices on bacterial diversity

IF 5.4 Q1 PLANT SCIENCES

Current Plant Biology Pub Date : 2025-04-05 DOI:10.1016/j.cpb.2025.100478

Daniel Legesse, Yassine Bouhouch, Cédric Jacquard, Lisa Sanchez, Essaid Ait-Barka, Qassim Esmaeel

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引用次数: 0

Abstract

Investigating the grapevine microbiome is crucial for developing sustainable management practices in viticulture. This meta-analysis used amplicon metagenomics to analyze bacterial sequences from the Sequence Read Archive, covering 756 grapevine accessions. The dataset includes 378 paired end sequencing runs across twelve cultivars, four sample types, six origins, and two vineyard conditions. The analysis revealed significant variations in microbial communities across different grapevine cultivars and sample types, highlighting the influence of both the cultivar and ecological niche on microbial diversity. Differential abundance analyses further identified key microbial taxa driving variations across different grapevine plant parts. Furthermore, the study identified microbial taxa that consistently thrive across diverse conditions, suggesting their potential role in grapevine health and development. These findings support the possibility of utilizing specific microbial agents for biological control and sustainable vineyard management. This meta-analysis underscores the complexity of the grapevine microbiome and its pivotal role in vineyard ecosystems, providing valuable insights for future research and the advancement of sustainable viticulture practices.

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来源期刊

Current Plant Biology Agricultural and Biological Sciences-Plant Science

CiteScore

10.90

自引率

1.90%

发文量

审稿时长

50 days

期刊介绍： Current Plant Biology aims to acknowledge and encourage interdisciplinary research in fundamental plant sciences with scope to address crop improvement, biodiversity, nutrition and human health. It publishes review articles, original research papers, method papers and short articles in plant research fields, such as systems biology, cell biology, genetics, epigenetics, mathematical modeling, signal transduction, plant-microbe interactions, synthetic biology, developmental biology, biochemistry, molecular biology, physiology, biotechnologies, bioinformatics and plant genomic resources.