{"title":"Dynamic Programming for Chain Propagator Computation of Branched Block Copolymers in Polymer Field Theory Simulations","authors":"Daeseong Yong*, and , Jaeup U. Kim, ","doi":"10.1021/acs.jctc.5c0010310.1021/acs.jctc.5c00103","DOIUrl":null,"url":null,"abstract":"<p >We present an algorithmic approach to optimize chain propagator computations in polymer field theory simulations, including self-consistent field theory (SCFT) calculations and field-theoretic simulations (FTSs). Propagator calculations for branched block copolymers often involve recursive structures and overlapping subproblems, resulting in redundant computations. By employing dynamic programming (DP) and encoding computational dependencies as strings, our method systematically eliminates these redundancies in mixtures of branched polymers. The algorithm achieves optimal time complexity for various polymeric systems, including star-shaped, comb, dendrimer polymers, and homopolymer mixtures, by reusing and aggregating propagators for symmetric and repetitive structures. This enhances computational efficiency and reduces memory usage, addressing a key limitation in developing versatile polymer field theory simulation software. Our approach streamlines the simulation of complex branched polymers without requiring manual software adjustments, facilitating more efficient workflows for polymer researchers. Furthermore, the method enables automated searches for inverse design by optimizing computations across diverse branched polymer architectures, contributing to the discovery and design of novel polymeric materials. The algorithm is implemented in open-source software, ensuring accessibility for further development and broader application in computational polymer science.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 7","pages":"3676–3690 3676–3690"},"PeriodicalIF":5.7000,"publicationDate":"2025-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00103","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
We present an algorithmic approach to optimize chain propagator computations in polymer field theory simulations, including self-consistent field theory (SCFT) calculations and field-theoretic simulations (FTSs). Propagator calculations for branched block copolymers often involve recursive structures and overlapping subproblems, resulting in redundant computations. By employing dynamic programming (DP) and encoding computational dependencies as strings, our method systematically eliminates these redundancies in mixtures of branched polymers. The algorithm achieves optimal time complexity for various polymeric systems, including star-shaped, comb, dendrimer polymers, and homopolymer mixtures, by reusing and aggregating propagators for symmetric and repetitive structures. This enhances computational efficiency and reduces memory usage, addressing a key limitation in developing versatile polymer field theory simulation software. Our approach streamlines the simulation of complex branched polymers without requiring manual software adjustments, facilitating more efficient workflows for polymer researchers. Furthermore, the method enables automated searches for inverse design by optimizing computations across diverse branched polymer architectures, contributing to the discovery and design of novel polymeric materials. The algorithm is implemented in open-source software, ensuring accessibility for further development and broader application in computational polymer science.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.