Identification of Salivary Biomarkers in Colorectal Cancer by Integrating Olink Proteomics and Metabolomics.

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Journal of Proteome Research Pub Date : 2025-05-02 Epub Date: 2025-04-04 DOI:10.1021/acs.jproteome.5c00091
Hairong Su, Xiangyu Gu, Weizheng Zhang, Fengye Lin, Xinyi Lu, Xuan Zeng, Chuyang Wang, Weicheng Chen, Wofeng Liu, Ping Tan, Liaonan Zou, Bing Gu, Qubo Chen
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引用次数: 0

Abstract

Identifying novel biomarkers is crucial for early detection of colorectal cancer (CRC). Saliva, as a noninvasive sample, holds promise for CRC detection. Here, we used Olink proteomics and untargeted metabolomics to analyze saliva samples from CRC patients and healthy controls with the aim of identifying candidate biomarkers in CRC saliva. Univariate and multivariate analyses revealed 16 differentially expressed proteins (DEPs) and 40 differentially accumulated metabolites (DAMs). Pathway enrichment showed DEPs were mainly involved in cancer transcriptional dysregulation, Toll-like receptor signaling, and chemokine signaling. Metabolomics analysis highlighted significant changes in amino acid metabolites, particularly in pathways such as arginine biosynthesis, histidine metabolism, and cysteine and methionine metabolism. Random forest analysis and ELISA validation identified four potential biomarkers: succinate, l-methionine, GZMB, and MMP12. A combined protein-metabolite diagnostic model was developed using logistic regression, achieving an area under the curve of 0.933 (95% CI: 0.871-0.996) for the discovery cohort and 0.969 (95% CI: 0.918-1.000) for the validation cohort, effectively distinguishing CRC patients from healthy individuals. In conclusion, our study identified and validated a panel of noninvasive saliva-based biomarkers that could improve CRC screening and provide new insights into clinical CRC diagnosis.

结合Olink蛋白质组学和代谢组学鉴定结直肠癌唾液生物标志物。
识别新的生物标志物对于早期发现结直肠癌(CRC)至关重要。唾液作为一种非侵入性样本,有望用于结直肠癌的检测。在这里,我们使用Olink蛋白质组学和非靶向代谢组学分析CRC患者和健康对照的唾液样本,目的是确定CRC唾液中的候选生物标志物。单因素和多因素分析显示有16种差异表达蛋白(DEPs)和40种差异积累代谢物(dam)。途径富集表明,DEPs主要参与肿瘤转录失调、toll样受体信号传导和趋化因子信号传导。代谢组学分析强调了氨基酸代谢物的显著变化,特别是在精氨酸生物合成、组氨酸代谢、半胱氨酸和蛋氨酸代谢等途径中。随机森林分析和ELISA验证鉴定了四种潜在的生物标志物:琥珀酸盐、l-蛋氨酸、GZMB和MMP12。采用logistic回归建立蛋白-代谢物联合诊断模型,发现组曲线下面积为0.933 (95% CI: 0.871-0.996),验证组曲线下面积为0.969 (95% CI: 0.918-1.000),有效区分结直肠癌患者与健康人群。总之,我们的研究确定并验证了一组基于唾液的无创生物标志物,可以改善CRC筛查并为临床CRC诊断提供新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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