Biologging intelligent Platform (BiP): an integrated and standardized platform for sharing, visualizing, and analyzing biologging data.

IF 3.4 1区 生物学 Q2 ECOLOGY
Katsufumi Sato, Shinichi Watanabe, Takuji Noda, Takuya Koizumi, Ken Yoda, Yuuki Y Watanabe, Kentaro Q Sakamoto, Teijiro Isokawa, Makoto A Yoshida, Kagari Aoki, Akinori Takahashi, Takashi Iwata, Hideaki Nishizawa, Takuya Maekawa, Ryo Kawabe, Yutaka Watanuki
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引用次数: 0

Abstract

Sharing biologging data can facilitate collaborative research and biological conservation by providing maps showing animals' distribution and movements. It is a critical social mission to preserve not only horizontal position data, but also behavioral data such as diving depth, flight altitude, speed, and acceleration, as well as physiological data such as body temperature, along with related metadata, ensuring their preservation for future generation. Moreover, although biologging was initially developed in the field of biology, it now contributes to diverse fields such as meteorology and oceanography, leading to expanded opportunities for secondary data utilization. In light of social and academic requirements, we developed "Biologging intelligent Platform (BiP)", which adheres to internationally recognized standards for sensor data and metadata storage. As a result, BiP not only stores sensor data along with metadata but also standardizes this information to facilitate secondary data analysis, facilitating broader applications of biologging data across various disciplines. By visiting the website ( https://www.bip-earth.com ) and completing the user registration, data owners can interactively upload sensor data, input metadata associated with individual animals, devices, and deployments, standardize data formats, and choose between open and private settings for sharing data. Anyone interested in utilizing the data can access metadata and visualized route maps, irrespective of the data's open or private status. Users can freely download open datasets that are available under the CC BY 4.0 license, which permits copying, redistribution, and modification while adhering to the metadata's credit requirements. To use private datasets, users can contact the data owner to request permission. A unique feature of BiP is the Online Analytical Processing (OLAP) tools that calculate environmental parameters, such as surface currents, ocean winds, and waves from data collected by animals. Algorithms published in some previous studies are integrated into the OLAP which can estimate the environmental and behavioral parameters. To enhance data accessibility, BiP allows users to search for datasets using the DOI of the paper in which the data was used. We believe that linking with other databases for data exchange and multi-repository storage could enhance the sustainability of the data itself.

共享生物记录数据可以提供显示动物分布和移动的地图,从而促进合作研究和生物保护。不仅要保存水平位置数据,还要保存潜水深度、飞行高度、速度和加速度等行为数据,以及体温等生理数据和相关元数据,确保为后代保存这些数据,这是一项重要的社会任务。此外,虽然生物全息技术最初是在生物学领域发展起来的,但现在它也为气象学和海洋学等不同领域做出了贡献,从而扩大了二次数据利用的机会。根据社会和学术界的要求,我们开发了 "Biologging 智能平台(BiP)",该平台遵循国际公认的传感器数据和元数据存储标准。因此,BiP 不仅能存储传感器数据和元数据,还能将这些信息标准化,便于进行二次数据分析,从而促进生物监测数据在各学科中的更广泛应用。通过访问网站( https://www.bip-earth.com )并完成用户注册,数据所有者可以交互式上传传感器数据,输入与单个动物、设备和部署相关的元数据,标准化数据格式,并在开放和私密设置之间选择数据共享。任何有兴趣使用数据的人都可以访问元数据和可视化路线地图,而不论数据的开放或私有状态如何。用户可以自由下载根据 CC BY 4.0 许可提供的开放式数据集,该许可允许复制、再分发和修改,同时遵守元数据的信用要求。要使用私有数据集,用户可联系数据所有者申请许可。BiP 的一个独特功能是在线分析处理 (OLAP) 工具,可根据动物收集的数据计算环境参数,如表层流、海风和海浪。OLAP 中集成了之前一些研究发布的算法,可以估算环境和行为参数。为了提高数据的可访问性,BiP 允许用户使用使用数据的论文 DOI 搜索数据集。我们相信,与其他数据库链接以进行数据交换和多库存储,可增强数据本身的可持续性。
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来源期刊
Movement Ecology
Movement Ecology Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
6.60
自引率
4.90%
发文量
47
审稿时长
23 weeks
期刊介绍: Movement Ecology is an open-access interdisciplinary journal publishing novel insights from empirical and theoretical approaches into the ecology of movement of the whole organism - either animals, plants or microorganisms - as the central theme. We welcome manuscripts on any taxa and any movement phenomena (e.g. foraging, dispersal and seasonal migration) addressing important research questions on the patterns, mechanisms, causes and consequences of organismal movement. Manuscripts will be rigorously peer-reviewed to ensure novelty and high quality.
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