Comparative Analysis of Methods for Assessing On-Target Gene Editing Efficiencies.

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS
Bing Yao, Qiangbing Yang, Manuel A F V Gonçalves, Raymond Schiffelers, Joost P G Sluijter, Zhiyong Lei
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引用次数: 0

Abstract

Genome editing based on CRISPR-derived technologies has become a cornerstone in both fundamental research and clinical applications. Accurately measuring editing efficiency is crucial for developing and applying genome editing strategies. This study offers a detailed comparison of widely used techniques for evaluating on-target gene editing efficiency, including T7 Endonuclease I (T7EI), Tracking of Indels by Decomposition (TIDE), Inference of CRISPR Edits (ICE), droplet digital PCR (ddPCR), and live-cell assays involving engineered fluorescent reporter cells. Through a comparative analysis, this study highlights the unique strengths and limitations of each method, aiding researchers in choosing the most appropriate method for their specific needs, ensuring more tailored monitoring of genome editing outcomes in a precise and reliable manner.

评估靶上基因编辑效率的方法比较分析。
基于crispr衍生技术的基因组编辑已经成为基础研究和临床应用的基石。准确测量编辑效率对于开发和应用基因组编辑策略至关重要。本研究详细比较了广泛用于评估靶上基因编辑效率的技术,包括T7内切酶I (T7EI)、分解追踪Indels (TIDE)、CRISPR编辑推断(ICE)、微滴数字PCR (ddPCR)和涉及工程荧光报告细胞的活细胞试验。通过对比分析,本研究突出了每种方法的独特优势和局限性,帮助研究人员根据自己的具体需求选择最合适的方法,确保以精确可靠的方式更有针对性地监测基因组编辑结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Methods and Protocols
Methods and Protocols Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (miscellaneous)
CiteScore
3.60
自引率
0.00%
发文量
85
审稿时长
8 weeks
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