Understanding the mode of action of BtEcR/USP-LBD with benzpyrimoxan in combination with high throughput SPR screening and molecular simulation approaches

IF 4.2 1区 农林科学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Hongyan Wang , Jialin Cui , Yanjiao Feng , Xinpeng Sun , Qinyan Tan , Li Zhang
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引用次数: 0

Abstract

Bemisia tabaci (B. tabaci) is a major agricultural pest that infests over 500 plant species, posing a significant threat to agricultural production due to its polyphagy, adaptability, and ability to transmit plant viruses. Excessive and improper insecticide use has caused resistance to pyrethroids, organophosphates, and neonicotinoids, creating an urgent need for new insecticides with novel structures and mechanisms of action. In this study, we developed an in vitro test platform targeting B. tabaci ecdysteroid receptor (BtEcR/USP-LBD) using Surface Plasmon Resonance (SPR) and investigated the novel insect growth regulator benzpyrimoxan through SPR, molecular docking, and molecular dynamics (MD) simulations. Benzpyrimoxan specifically bound to BtEcR/USP-LBD with a kinetic KD of 14.19 μM, but its binding strength was lower than that of PonA (KD = 0.21 μM). SPR and MD analyses showed that benzpyrimoxan had a slower binding rate and weaker interactions with Cys394 and Asn390 in the ligand binding domain of BtEcR (BtEcR-LBD), compared to PonA. Met389, Asn390, Thr393 and Cys394 have been shown to establish a specific hydrogen-bonding network in BtEcR-LBD, which exhibits significant variations in HvEcR-LBD. Molecular docking and MD simulations showed that benzpyrimoxan forms hydrogen bonds with this network but requires greater stability to enhance binding. This study identifies the potential mode of action of benzpyrimoxan and offers a strategy for discovering novel ecdysteroid analogues for controlling B. tabaci.

Abstract Image

结合高通量SPR筛选和分子模拟方法,了解BtEcR/USP-LBD与benzpyrimoxan的作用模式
烟粉虱(B. tabaci)是一种主要的农业害虫,侵害500多种植物,由于其多食性、适应性和传播植物病毒的能力,对农业生产构成重大威胁。过量和不当使用杀虫剂已引起对拟除虫菊酯、有机磷酸酯和新烟碱类杀虫剂的抗药性,迫切需要具有新结构和作用机制的新型杀虫剂。本研究利用表面等离子体共振(SPR)技术建立了烟草粉虱表皮甾体受体(BtEcR/USP-LBD)体外测试平台,并通过SPR、分子对接和分子动力学(MD)模拟对新型昆虫生长调节剂苯并吡莫昔进行了研究。Benzpyrimoxan与BtEcR/USP-LBD的结合动力学KD为14.19 μM,但其结合强度低于PonA (KD = 0.21 μM)。SPR和MD分析表明,与PonA相比,benzpyrimoxan在BtEcR配体结合域(BtEcR- lbd)与Cys394和Asn390的结合速率较慢,相互作用较弱。Met389、Asn390、Thr393和Cys394在BtEcR-LBD中建立了特定的氢键网络,在HvEcR-LBD中表现出显著的差异。分子对接和MD模拟表明,benzpyrimoxan与该网络形成氢键,但需要更大的稳定性来增强结合。本研究确定了苯并吡莫嗪的潜在作用模式,并为发现新的表皮甾体类似物以控制烟粉虱提供了策略。
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来源期刊
CiteScore
7.00
自引率
8.50%
发文量
238
审稿时长
4.2 months
期刊介绍: Pesticide Biochemistry and Physiology publishes original scientific articles pertaining to the mode of action of plant protection agents such as insecticides, fungicides, herbicides, and similar compounds, including nonlethal pest control agents, biosynthesis of pheromones, hormones, and plant resistance agents. Manuscripts may include a biochemical, physiological, or molecular study for an understanding of comparative toxicology or selective toxicity of both target and nontarget organisms. Particular interest will be given to studies on the molecular biology of pest control, toxicology, and pesticide resistance. Research Areas Emphasized Include the Biochemistry and Physiology of: • Comparative toxicity • Mode of action • Pathophysiology • Plant growth regulators • Resistance • Other effects of pesticides on both parasites and hosts.
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