Fine-Tuning Graph Neural Networks via Active Learning: Unlocking the Potential of Graph Neural Networks Trained on Nonaqueous Systems for Aqueous CO2 Reduction
Zihao Jiao, Yu Mao, Ruihu Lu, Ya Liu, Liejin Guo* and Ziyun Wang*,
{"title":"Fine-Tuning Graph Neural Networks via Active Learning: Unlocking the Potential of Graph Neural Networks Trained on Nonaqueous Systems for Aqueous CO2 Reduction","authors":"Zihao Jiao, Yu Mao, Ruihu Lu, Ya Liu, Liejin Guo* and Ziyun Wang*, ","doi":"10.1021/acs.jctc.5c0008910.1021/acs.jctc.5c00089","DOIUrl":null,"url":null,"abstract":"<p >Graph neural networks (GNNs) have revolutionized catalysis research with their efficiency and accuracy in modeling complex chemical interactions. However, adapting GNNs trained on nonaqueous data sets to aqueous systems poses notable challenges due to intricate water interactions. In this study, we proposed an active learning-based fine-tuning approach to extend the applicability of GNNs to aqueous environments. The geometry optimization and transition state search workflows are designed to reduce computational costs while maintaining DFT-level accuracy. Applied to the CO<sub>2</sub> reduction reaction, the workflow delivers a 2–3-fold acceleration in geometry optimization through a relaxed force threshold combined with DFT refinement. The versatility of the transition state search algorithm was demonstrated on key C–C coupling pathways, pinpointing *CO–*COH as the most energetically favorable pathway in aqueous systems of Cu and Cu-based Ag, Au, and Zn alloys. The Brønsted–Evans–Polanyi relationship remains robust under water-induced fluctuations, with alloyed metals such as Al, Ga, and Pd, along with Ag, Au, and Zn, exhibiting coupling efficiency comparable to that of Cu. Additionally, perturbation-based training on forces and energies extends the application of GNNs to aqueous ab initio molecular dynamics simulations, enabling efficient modeling of dynamical trajectories. This work presents novel approaches to adapting nonaqueous models for application in aqueous systems, highlighting GNNs’ potential in solvated environments and laying a foundation for accelerating predictions of catalytic mechanisms under realistic conditions.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 6","pages":"3176–3186 3176–3186"},"PeriodicalIF":5.7000,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00089","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Graph neural networks (GNNs) have revolutionized catalysis research with their efficiency and accuracy in modeling complex chemical interactions. However, adapting GNNs trained on nonaqueous data sets to aqueous systems poses notable challenges due to intricate water interactions. In this study, we proposed an active learning-based fine-tuning approach to extend the applicability of GNNs to aqueous environments. The geometry optimization and transition state search workflows are designed to reduce computational costs while maintaining DFT-level accuracy. Applied to the CO2 reduction reaction, the workflow delivers a 2–3-fold acceleration in geometry optimization through a relaxed force threshold combined with DFT refinement. The versatility of the transition state search algorithm was demonstrated on key C–C coupling pathways, pinpointing *CO–*COH as the most energetically favorable pathway in aqueous systems of Cu and Cu-based Ag, Au, and Zn alloys. The Brønsted–Evans–Polanyi relationship remains robust under water-induced fluctuations, with alloyed metals such as Al, Ga, and Pd, along with Ag, Au, and Zn, exhibiting coupling efficiency comparable to that of Cu. Additionally, perturbation-based training on forces and energies extends the application of GNNs to aqueous ab initio molecular dynamics simulations, enabling efficient modeling of dynamical trajectories. This work presents novel approaches to adapting nonaqueous models for application in aqueous systems, highlighting GNNs’ potential in solvated environments and laying a foundation for accelerating predictions of catalytic mechanisms under realistic conditions.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.