Mayra Avelar, Carmen Coppola, Alessio d’Ettorre, Andrea Ienco, Maria Laura Parisi, Riccardo Basosi, Annalisa Santucci, Massimo Olivucci and Adalgisa Sinicropi*,
{"title":"In Silico Study of a Bacteriorhodopsin/TiO2 Hybrid System at the Molecular Level","authors":"Mayra Avelar, Carmen Coppola, Alessio d’Ettorre, Andrea Ienco, Maria Laura Parisi, Riccardo Basosi, Annalisa Santucci, Massimo Olivucci and Adalgisa Sinicropi*, ","doi":"10.1021/acs.jctc.4c0137010.1021/acs.jctc.4c01370","DOIUrl":null,"url":null,"abstract":"<p >Bacteriorhodopsin (bR) is a light-harvesting membrane protein that represents a promising sensitizer of TiO<sub>2</sub> for photovoltaic and photoelectrochemical devices. However, despite numerous experimental studies, the molecular-level understanding of the bR/TiO<sub>2</sub> hybrid system is still unsatisfactory. In this contribution, we report the construction and analysis of an atomistic model of such a system. To do so, both steered molecular dynamics-molecular dynamics and quantum mechanics/molecular mechanics computations are applied to four different bR orientations on the anatase TiO<sub>2</sub> surface. The resulting bR/TiO<sub>2</sub> models are then used to compute the light absorption maxima changes relative to those of bR. We show that all four models reproduce the experimentally observed blue-shift value induced by bR binding on TiO<sub>2</sub> and could be used to study the binding and binding-induced protein modifications. We conclude that the constructed models could provide a basis for future studies aiming to simulate the complex long-range electron transfer mechanism in bR/TiO<sub>2</sub>-based solar energy conversion devices as well as in engineering bR to achieve enhanced efficiencies.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 6","pages":"3231–3245 3231–3245"},"PeriodicalIF":5.5000,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.jctc.4c01370","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.4c01370","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Bacteriorhodopsin (bR) is a light-harvesting membrane protein that represents a promising sensitizer of TiO2 for photovoltaic and photoelectrochemical devices. However, despite numerous experimental studies, the molecular-level understanding of the bR/TiO2 hybrid system is still unsatisfactory. In this contribution, we report the construction and analysis of an atomistic model of such a system. To do so, both steered molecular dynamics-molecular dynamics and quantum mechanics/molecular mechanics computations are applied to four different bR orientations on the anatase TiO2 surface. The resulting bR/TiO2 models are then used to compute the light absorption maxima changes relative to those of bR. We show that all four models reproduce the experimentally observed blue-shift value induced by bR binding on TiO2 and could be used to study the binding and binding-induced protein modifications. We conclude that the constructed models could provide a basis for future studies aiming to simulate the complex long-range electron transfer mechanism in bR/TiO2-based solar energy conversion devices as well as in engineering bR to achieve enhanced efficiencies.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.