CatTSunami: Accelerating Transition State Energy Calculations with Pretrained Graph Neural Networks

IF 11.3 1区 化学 Q1 CHEMISTRY, PHYSICAL
Brook Wander, Muhammed Shuaibi, John R. Kitchin, Zachary W. Ulissi, C. Lawrence Zitnick
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Abstract

Direct access to transition state energies at low computational cost unlocks the possibility of accelerating catalyst discovery. We show that the top performing graph neural network potential trained on the OC20 data set, a related but different task, is able to find transition states energetically similar (within 0.1 eV) to density functional theory (DFT) 91% of the time with a 28× speedup. This speaks to the generalizability of the models, having never been explicitly trained on reactions, the machine learned potential approximates the potential energy surface well enough to be performant for this auxiliary task. We introduce the Open Catalyst 2020 Nudged Elastic Band (OC20NEB) data set, which is made of 932 DFT nudged elastic band calculations, to benchmark machine learned model performance on transition state energies. To demonstrate the efficacy of this approach, we for the first time explicitly treated a large reaction network with 61 intermediates and 174 dissociation reactions at DFT resolution (40 meV). To find low energy transition states we densely enumerate many possible NEBs. Using DFT this would have taken 52 GPU years. With ML we realized a 1500× speedup for dense enumerations, using just 12 GPU days of compute. Similar searches for complete reaction networks could become routine using the approach presented here. Finally, we constructed an ammonia synthesis activity volcano and systematically found lower energy configurations of the transition states and intermediates on six stepped unary surfaces than had previously been reported. This scalable approach offers a more complete treatment of configurational space to improve and accelerate catalyst discovery.

Abstract Image

用预训练的图神经网络加速过渡态能量计算
以较低的计算成本直接获取过渡态能量,开启了加速催化剂发现的可能性。我们表明,在OC20数据集(一个相关但不同的任务)上训练的表现最好的图神经网络电位能够在91%的时间内找到与密度泛函理论(DFT)能量相似(在0.1 eV内)的过渡态,并且加速了28倍。这说明了模型的可泛化性,从未明确训练过反应,机器学习的势能足以很好地接近势能面,以执行此辅助任务。我们引入了Open Catalyst 2020轻推弹性带(OC20NEB)数据集,该数据集由932个DFT轻推弹性带计算组成,用于测试机器学习模型在过渡态能量上的性能。为了证明这种方法的有效性,我们首次在DFT分辨率(40 meV)下明确处理了一个包含61个中间体和174个解离反应的大型反应网络。为了找到低能跃迁态,我们密集地列举了许多可能的neb。如果使用DFT,这需要52个GPU年。使用ML,我们实现了密集枚举的1500倍加速,仅使用12个GPU天的计算。使用本文提出的方法,对完整反应网络的类似搜索可能成为常规。最后,我们构建了一个氨合成活火山,系统地发现了六阶一元表面上的过渡态和中间体的能量构型比以前报道的要低。这种可扩展的方法提供了更完整的构型空间处理,以改善和加速催化剂的发现。
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来源期刊
ACS Catalysis
ACS Catalysis CHEMISTRY, PHYSICAL-
CiteScore
20.80
自引率
6.20%
发文量
1253
审稿时长
1.5 months
期刊介绍: ACS Catalysis is an esteemed journal that publishes original research in the fields of heterogeneous catalysis, molecular catalysis, and biocatalysis. It offers broad coverage across diverse areas such as life sciences, organometallics and synthesis, photochemistry and electrochemistry, drug discovery and synthesis, materials science, environmental protection, polymer discovery and synthesis, and energy and fuels. The scope of the journal is to showcase innovative work in various aspects of catalysis. This includes new reactions and novel synthetic approaches utilizing known catalysts, the discovery or modification of new catalysts, elucidation of catalytic mechanisms through cutting-edge investigations, practical enhancements of existing processes, as well as conceptual advances in the field. Contributions to ACS Catalysis can encompass both experimental and theoretical research focused on catalytic molecules, macromolecules, and materials that exhibit catalytic turnover.
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