Insight into the Volumetric Properties, Acoustic Properties, Density Functional Theory (DFT) and Molecular Docking of Surface-Active Ionic Liquid (SAIL) [OMim][Br] with l-Asparagine and Glycyl-l-asparagine
Ravinder Sharma, Pamita Awasthi*, Manu Vatsal, Vandna Devi, Arti Sharma, Ritu, Renu Dogra, Indra Bahadur*, Faruq Mohammad and Ahmed Abdullah Soleiman,
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引用次数: 0
Abstract
Achieving an optimal design requires a detailed understanding of the interactions at the molecular level between drug molecules and biological membranes. This study focuses on examining the interaction between synthesized methyl imidazolium-based monocationic surface-active ionic liquid, 1-octyl-3-methylimidazolium bromide and how they interacted with glycyl-l-asparagine and l-asparagine. The density and the sound speed measurements were used to calculate thermodynamic parameters such as apparent molar volumes (Vϕ) and apparent molar isentropic compression (Kϕ,s). To enhance comprehension of the molecular interactions between amino acids and ILs in aqueous media, density functional theory (DFT) classical molecular docking (MD) simulations were used. With the help of computational simulations, it is possible to link the hydrophobicity of the amino acids to the kind and intensity of their interactions with ILs in aqueous solutions. This mechanism explains the direction and size of the solubility phenomena seen in [IL + amino acid + water] systems and is controlled by the balance between the competitive interactions of the IL cation, IL anion, and water with the amino acids. The results provide important implications for the design of ionic liquid-based solvents, particularly in tailoring them for specific biochemical applications where optimizing solute–solvent interactions is critical for enhancing system performance.
要实现最佳设计,就必须详细了解药物分子与生物膜之间在分子水平上的相互作用。本研究重点考察了合成的甲基咪唑基单配位表面活性离子液体 1-辛基-3-甲基咪唑溴化物与甘氨酰-天冬酰胺和 l-天冬酰胺之间的相互作用。密度和声速测量值用于计算热力学参数,如表观摩尔体积(Vϕ)和表观摩尔等熵压缩(Kϕ,s)。为了更好地理解氨基酸与水介质中 IL 之间的分子相互作用,使用了密度泛函理论(DFT)经典分子对接(MD)模拟。在计算模拟的帮助下,可以将氨基酸的疏水性与其在水溶液中与 IL 的相互作用种类和强度联系起来。这一机制解释了[IL + 氨基酸 + 水]体系中溶解现象的方向和大小,并由 IL 阳离子、IL 阴离子和水与氨基酸的竞争性相互作用之间的平衡所控制。这些结果对设计基于离子液体的溶剂具有重要意义,特别是在为特定生化应用定制溶剂时,优化溶质与溶剂之间的相互作用对提高系统性能至关重要。
期刊介绍:
The Journal of Chemical & Engineering Data is a monthly journal devoted to the publication of data obtained from both experiment and computation, which are viewed as complementary. It is the only American Chemical Society journal primarily concerned with articles containing data on the phase behavior and the physical, thermodynamic, and transport properties of well-defined materials, including complex mixtures of known compositions. While environmental and biological samples are of interest, their compositions must be known and reproducible. As a result, adsorption on natural product materials does not generally fit within the scope of Journal of Chemical & Engineering Data.