Development of a deep learning-based model to evaluate changes during radiotherapy using cervical cancer digital pathology.

IF 2 4区 医学 Q2 BIOLOGY
Masaaki Goto, Yasunori Futamura, Hirokazu Makishima, Takashi Saito, Noriaki Sakamoto, Tatsuo Iijima, Yoshio Tamaki, Toshiyuki Okumura, Tetsuya Sakurai, Hideyuki Sakurai
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引用次数: 0

Abstract

This study aims to create a deep learning-based classification model for cervical cancer biopsy before and during radiotherapy, visualize the results on whole slide images (WSIs), and explore the clinical significance of obtained features. This study included 95 patients with cervical cancer who received radiotherapy between April 2013 and December 2020. Hematoxylin-eosin stained biopsies were digitized to WSIs and divided into small tiles. Our model adopted the feature extractor of DenseNet121 and the classifier of the support vector machine. About 12 400 tiles were used for training the model and 6000 tiles for testing. The model performance was assessed on a per-tile and per-WSI basis. The resultant probability was defined as radiotherapy status probability (RSP) and its color map was visualized on WSIs. Survival analysis was performed to examine the clinical significance of the RSP. In the test set, the trained model had an area under the receiver operating characteristic curve of 0.76 per-tile and 0.95 per-WSI. In visualization, the model focused on viable tumor components and stroma in tumor biopsies. While survival analysis failed to show the prognostic impact of RSP during treatment, cases with low RSP at diagnosis had prolonged overall survival compared to those with high RSP (P = 0.045). In conclusion, we successfully developed a model to classify biopsies before and during radiotherapy and visualized the result on slide images. Low RSP cases before treatment had a better prognosis, suggesting that tumor morphologic features obtained using the model may be useful for predicting prognosis.

开发一种基于深度学习的模型,利用宫颈癌数字病理学来评估放疗期间的变化。
本研究旨在建立基于深度学习的宫颈癌放疗前和放疗中活检分类模型,并将结果在全切片图像(WSIs)上可视化,并探讨所获得特征的临床意义。这项研究包括95名宫颈癌患者,他们在2013年4月至2020年12月期间接受了放疗。苏木精-伊红染色的活组织切片数字化为wsi,并分成小块。我们的模型采用DenseNet121的特征提取器和支持向量机的分类器。大约12400块瓦片用于训练模型,6000块瓦片用于测试。模型性能是在每个tile和每个wsi的基础上进行评估的。将结果概率定义为放疗状态概率(RSP),并在wsi上显示其颜色图。通过生存分析来检验RSP的临床意义。在测试集中,训练模型在接收者工作特征曲线下的面积为0.76 / tile和0.95 / wsi。在可视化方面,该模型专注于活的肿瘤成分和肿瘤活检中的基质。虽然生存分析未能显示治疗期间RSP对预后的影响,但诊断时RSP低的患者比RSP高的患者总生存期更长(P = 0.045)。总之,我们成功地开发了一个模型,在放疗前和放疗期间对活检进行分类,并在幻灯片图像上显示结果。治疗前RSP较低的患者预后较好,提示利用该模型获得的肿瘤形态学特征可能有助于预测预后。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
3.60
自引率
5.00%
发文量
86
审稿时长
4-8 weeks
期刊介绍: The Journal of Radiation Research (JRR) is an official journal of The Japanese Radiation Research Society (JRRS), and the Japanese Society for Radiation Oncology (JASTRO). Since its launch in 1960 as the official journal of the JRRS, the journal has published scientific articles in radiation science in biology, chemistry, physics, epidemiology, and environmental sciences. JRR broadened its scope to include oncology in 2009, when JASTRO partnered with the JRRS to publish the journal. Articles considered fall into two broad categories: Oncology & Medicine - including all aspects of research with patients that impacts on the treatment of cancer using radiation. Papers which cover related radiation therapies, radiation dosimetry, and those describing the basis for treatment methods including techniques, are also welcomed. Clinical case reports are not acceptable. Radiation Research - basic science studies of radiation effects on livings in the area of physics, chemistry, biology, epidemiology and environmental sciences. Please be advised that JRR does not accept any papers of pure physics or chemistry. The journal is bimonthly, and is edited and published by the JRR Editorial Committee.
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