Genome sequence of a new densovirus infecting the leaf-curl plum aphid brachycaudus helichrysi

IF 2.5 4区 医学 Q3 VIROLOGY
Yuxiang Li, Yixiang Ma, Xinrong Liu, Ya Guo, Ning Ji, Zhaofei Li
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引用次数: 0

Abstract

Using degenerate primers and an overlap PCR approach, we identified a new densovirus (family Parvoviridae, subfamily Densovirinae) in an asexual clone of the leaf-curl plum aphid, Brachycaudus helichrysi, collected in Baoji, China, in June 2021. A nearly complete genome sequence of 5,551 nucleotides (nt) was obtained. The virus, with the proposed name “Brachycaudus helichrysi densovirus” (BhDV), has an ambisense genome organization with two ORFs in the sense strand encoding the nonstructural proteins NS1 and NS2 and one ORF at the antisense strand encoding the virion capsid protein VP. These proteins share 37–70% and 10–33% amino acid sequence identity with homologs of the other aphid densoviruses and non-aphid densoviruses, respectively. Phylogenetic analysis suggested that this virus is a member of a new species in the genus Hemiambidensovirus.

侵染叶曲梅蚜的一种新型致密病毒的基因组序列
利用简并引物和重叠PCR方法,从2021年6月在宝鸡采集的叶卷梅蚜无性无性系Brachycaudus helichrysi中鉴定出一种新的致密病毒(细小病毒科,致密病毒亚科)。获得了5,551个核苷酸(nt)的几乎完整的基因组序列。该病毒被命名为“螺旋体短尾病毒”(BhDV),具有双义基因组组织,在义链上有两个ORF编码非结构蛋白NS1和NS2,反义链上有一个ORF编码病毒粒子衣壳蛋白VP。这些蛋白与其他蚜虫致密病毒和非蚜虫致密病毒的同源物分别具有37-70%和10-33%的氨基酸序列同源性。系统发育分析表明,该病毒是半ambibidensovirus属一个新种的成员。
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来源期刊
Archives of Virology
Archives of Virology 医学-病毒学
CiteScore
5.10
自引率
7.40%
发文量
324
审稿时长
4.5 months
期刊介绍: Archives of Virology publishes original contributions from all branches of research on viruses, virus-like agents, and virus infections of humans, animals, plants, insects, and bacteria. Coverage spans a broad spectrum of topics, from descriptions of newly discovered viruses, to studies of virus structure, composition, and genetics, to studies of virus interactions with host cells, organisms and populations. Studies employ molecular biologic, molecular genetics, and current immunologic and epidemiologic approaches. Contents include studies on the molecular pathogenesis, pathophysiology, and genetics of virus infections in individual hosts, and studies on the molecular epidemiology of virus infections in populations. Also included are studies involving applied research such as diagnostic technology development, monoclonal antibody panel development, vaccine development, and antiviral drug development.Archives of Virology wishes to publish obituaries of recently deceased well-known virologists and leading figures in virology.
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