The openBIS Digital Platform for Instrumentation and Data Workflow in the Analytical Laboratory.

IF 1.1 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Chimia Pub Date : 2025-02-26 DOI:10.2533/chimia.2025.36
Yousuf Hemani, Kilian Koch, Oscar Mendo-Diaz, Anusch Bachhofner, Simone Baffelli, Davide Bleiner
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引用次数: 0

Abstract

The management of scientific data plays a key role in all research areas and has increased in importance. Providing researchers with customizable data management tools is crucial for effectively managing data according to the FAIR principles. These principles have been defined by Wilkinson et al. in 2016, which describe how scientific data should be managed.[1] To support the specific needs of researchers at Empa, openBIS[2] was chosen as a FAIR compliant data management platform. OpenBIS is an Electronic Laboratory Notebook (ELN) and Laboratory Information Management System (LIMS) developed at ETH. The commissioning of this platform for the case of an analytical chemistry lab presented multiple challenges. In this paper, solutions to adapt openBIS as a digital platform to integrate the laboratory data workflow in chemical analysis and for spectroscopy instruments are presented. Two laboratory projects as case studies are described, consisting of a data pipeline and a complex dashboard for data collection, visualization and interaction. These examples show a successful integration of the data management platform in accordance with the FAIR data guidelines along with maximizing efficiency for laboratory personnel.

用于分析实验室仪器和数据工作流的openBIS数字平台。
科学数据的管理在所有研究领域中都起着关键作用,并且越来越重要。为研究人员提供可定制的数据管理工具对于根据FAIR原则有效管理数据至关重要。这些原则由Wilkinson等人在2016年定义,描述了应该如何管理科学数据为了支持Empa研究人员的特定需求,openBIS[2]被选为符合FAIR标准的数据管理平台。OpenBIS是ETH开发的电子实验室笔记本(ELN)和实验室信息管理系统(LIMS)。该平台在分析化学实验室的调试过程中遇到了多重挑战。本文提出了采用openBIS作为数字平台来集成化学分析和光谱仪器的实验室数据工作流的解决方案。描述了两个实验室项目作为案例研究,包括数据管道和用于数据收集、可视化和交互的复杂仪表板。这些例子显示了根据FAIR数据指南成功集成数据管理平台,并最大限度地提高了实验室人员的效率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Chimia
Chimia 化学-化学综合
CiteScore
1.60
自引率
0.00%
发文量
144
审稿时长
2 months
期刊介绍: CHIMIA, a scientific journal for chemistry in the broadest sense covers the interests of a wide and diverse readership. Contributions from all fields of chemistry and related areas are considered for publication in the form of Review Articles and Notes. A characteristic feature of CHIMIA are the thematic issues, each devoted to an area of great current significance.
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