Functional analytic derivation and CP2K implementation of the SCCS model based on the solvent-aware interface

IF 7.2 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Ziwei Chai, Sandra Luber
{"title":"Functional analytic derivation and CP2K implementation of the SCCS model based on the solvent-aware interface","authors":"Ziwei Chai,&nbsp;Sandra Luber","doi":"10.1016/j.cpc.2025.109563","DOIUrl":null,"url":null,"abstract":"<div><div>In the self-consistent continuum solvation (SCCS) approach (<em>J. Chem. Phys.</em> 136, 064102 (2012)), the analytical expressions of the local solute-solvent interface functions determine the interface function and dielectric function values at a given real space position based solely on the electron density at that position, completely disregarding the surrounding electron density distribution. Therefore, the low electron density areas inside the solute will be identified by the algorithm as regions where implicit solvent exists, resulting in the emergence of non-physical implicit solvent regions within the solute and even potentially leading to the divergence catastrophe of Kohn-Sham SCF calculations. We present a new and efficient SCCS implementation based on the solvent-aware interface (<em>J. Chem. Theory Comput.</em> 15, 3, 1996–2009 (2019)) which addresses this issue by utilizing a solute-solvent interface function based on convolution of electron density in the CP2K software package, which is based on the mixed Gaussian and plane waves (GPW) approach. Starting with the foundational formulas of SCCS, we have rigorously derived the contributions of the newly defined electrostatic energy to the Kohn-Sham potential and the analytical forces. This comprehensive derivation, which to the best of our knowledge is not available in the current literature, utilizes the updated versions of the solute-solvent interface function and the dielectric function, tailored to align with the specifics of the GPW implementation. Our implementation has been tested to successfully eliminate non-physical implicit solvent regions within the solute and achieve good SCF convergence, as demonstrated by test results for both bulk and surface models, namely liquid H<sub>2</sub>O, titanium dioxide, and platinum.</div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"311 ","pages":"Article 109563"},"PeriodicalIF":7.2000,"publicationDate":"2025-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465525000669","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

Abstract

In the self-consistent continuum solvation (SCCS) approach (J. Chem. Phys. 136, 064102 (2012)), the analytical expressions of the local solute-solvent interface functions determine the interface function and dielectric function values at a given real space position based solely on the electron density at that position, completely disregarding the surrounding electron density distribution. Therefore, the low electron density areas inside the solute will be identified by the algorithm as regions where implicit solvent exists, resulting in the emergence of non-physical implicit solvent regions within the solute and even potentially leading to the divergence catastrophe of Kohn-Sham SCF calculations. We present a new and efficient SCCS implementation based on the solvent-aware interface (J. Chem. Theory Comput. 15, 3, 1996–2009 (2019)) which addresses this issue by utilizing a solute-solvent interface function based on convolution of electron density in the CP2K software package, which is based on the mixed Gaussian and plane waves (GPW) approach. Starting with the foundational formulas of SCCS, we have rigorously derived the contributions of the newly defined electrostatic energy to the Kohn-Sham potential and the analytical forces. This comprehensive derivation, which to the best of our knowledge is not available in the current literature, utilizes the updated versions of the solute-solvent interface function and the dielectric function, tailored to align with the specifics of the GPW implementation. Our implementation has been tested to successfully eliminate non-physical implicit solvent regions within the solute and achieve good SCF convergence, as demonstrated by test results for both bulk and surface models, namely liquid H2O, titanium dioxide, and platinum.

Abstract Image

求助全文
约1分钟内获得全文 求助全文
来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信