The HTIRDB: A resource containing a transcriptional atlas for 105 different tissues from each of seven species of domestic herbivore

IF 23.7 Q1 MICROBIOLOGY

iMeta Pub Date : 2025-01-28 DOI:10.1002/imt2.267

Luoyang Ding, Yifan Wang, Linna Zhang, Chengfang Luo, Feifan Wu, Yiming Huang, Yongkang Zhen, Ning Chen, Limin Wang, Li Song, Kelsey Pool, Dominique Blache, Shane K. Maloney, Dongxu Liu, Zhiquan Yang, Xiaoyan Huang, Chuang Li, Xiang Yu, Zhenbin Zhang, Yifei Chen, Chun Xue, Yalan Gu, Weidong Huang, Lu Yan, Wenjun Wei, Yusu Wang, Jinying Zhang, Yifan Zhang, Yiquan Sun, Rui Dai, Shengbo Wang, Xinle Zhao, Haodong Wang, Ping Zhou, Qing-Yong Yang, Mengzhi Wang

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Abstract

Here, we describe the Herbivore Transcriptome Integrated Resource Database (HTIRDB, https://yanglab.hzau.edu.cn/HTIRDB#/). The HTIRDB comprises the self-generated transcriptomic data from 100 to 105 tissues from two female domestic herbivores from six species (cattle, donkey, goat, horse, rabbit, and sika deer) and two breeds of sheep, and an extra 28,710 related published datasets. The HTIRDB user-friendly interface provides tools and functionalities that facilitate the exploration of gene expression between tissues and species. The tools for comparative transcriptomics can be used to identify housekeeping genes, tissue-specific genes, species-specific genes, and species-conserved genes. To date, the HTIRDB is the most extensive transcriptome data resource for domestic herbivores that is freely available.

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HTIRDB：包含7种家养食草动物105种不同组织转录图谱的资源

在这里，我们描述了草食动物转录组整合资源数据库（HTIRDB, https://yanglab.hzau.edu.cn/HTIRDB#/）。HTIRDB包括来自6个物种（牛、驴、山羊、马、兔和梅花鹿）和两个绵羊品种的两种雌性家养食草动物的100至105个组织的自生成转录组数据，以及另外28,710个相关的已发表数据集。HTIRDB用户友好的界面提供了工具和功能，方便探索组织和物种之间的基因表达。比较转录组学的工具可用于鉴定内务基因、组织特异性基因、物种特异性基因和物种保守基因。迄今为止，HTIRDB是国内食草动物最广泛的免费转录组数据资源。

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来源期刊

iMeta

CiteScore

10.80

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0.00%

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