Machine Learning Model to Predict Free-Energy Landscape and Position-Dependent Diffusion Constant to Extend the Scale of Dynamic Monte Carlo Simulations.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-03-11 Epub Date: 2025-02-24 DOI:10.1021/acs.jctc.4c01552
Tetsuro Nagai, Nobuaki Kikkawa, Ryosuke Jinnouchi, Masayuki Kimura, Susumu Okazaki
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引用次数: 0

Abstract

We present a method to predict mass transport properties of large-scale heterogeneous media via coarse-grained dynamics using a dynamic Monte Carlo (MC) simulation aided by a machine learning (ML) surrogate model. The ML model was constructed to reproduce the free-energy landscape and local diffusion constant calculated by all-atom molecular dynamics (MD) simulations, aiming to efficiently evaluate these two local properties necessary for dynamic MC simulations. In this study, the ML model was built using kernel functions of descriptors representing local elemental distribution functions. The method was applied to the molecular diffusion of hydrogen in perfluorinated ionomer membranes for fuel cells, demonstrating that dynamic MC simulation using the ML model accurately reproduced the global diffusion constant across a wide range of humidity conditions, with a relative error of only 3% as compared with the original MC with the explicit position-dependent free energy and diffusion constant. On the basis of the learning curve of the ML model, even a relatively small training data set can reach a relative error of 5%. This approach is expected to be a valuable tool for elucidating mass transport mechanisms in various heterogeneous systems such as fuel cells, batteries, and biological systems.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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