Alexandre Boucher, Cameron Beevers, Bertrand Gauthier, Alberto Roldan
{"title":"Machine Learning Force Field for Optimization of Isolated and Supported Transition Metal Particles.","authors":"Alexandre Boucher, Cameron Beevers, Bertrand Gauthier, Alberto Roldan","doi":"10.1021/acs.jctc.4c01606","DOIUrl":null,"url":null,"abstract":"<p><p>Computational modeling is an integral part of catalysis research. With it, new methodologies are being developed and implemented to improve the accuracy of simulations while reducing the computational cost. In particular, specific machine-learning techniques have been applied to build interatomic potential from ab initio results. Here, we report an energy-free machine-learning calculator that combines three individually trained neural networks to predict the energy and atomic forces of metallic particles. The investigated structures were a monometallic Pd nanoparticle, a bimetallic AuPd nanoalloy, and supported Pd metal crystallites on silica. Atomic energies were predicted via a graph neural network, leading to a mean absolute error (MAE) within 0.004 eV from density functional theory (DFT) calculations. The task of predicting atomic forces was split over two feed-forward networks, one predicting the force norm and another its direction. The force prediction resulted in a MAE within 0.080 eV/Å against DFT results. The interpretability of the graph neural network predictions was demonstrated by underlying the physics of the monometallic particle in the form of cohesion energy.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"2626-2637"},"PeriodicalIF":5.7000,"publicationDate":"2025-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11912199/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01606","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/24 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Computational modeling is an integral part of catalysis research. With it, new methodologies are being developed and implemented to improve the accuracy of simulations while reducing the computational cost. In particular, specific machine-learning techniques have been applied to build interatomic potential from ab initio results. Here, we report an energy-free machine-learning calculator that combines three individually trained neural networks to predict the energy and atomic forces of metallic particles. The investigated structures were a monometallic Pd nanoparticle, a bimetallic AuPd nanoalloy, and supported Pd metal crystallites on silica. Atomic energies were predicted via a graph neural network, leading to a mean absolute error (MAE) within 0.004 eV from density functional theory (DFT) calculations. The task of predicting atomic forces was split over two feed-forward networks, one predicting the force norm and another its direction. The force prediction resulted in a MAE within 0.080 eV/Å against DFT results. The interpretability of the graph neural network predictions was demonstrated by underlying the physics of the monometallic particle in the form of cohesion energy.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.