Tasselyzer, a machine learning method to quantify maize anther exertion, based on PlantCV

IF 5.7 1区 生物学 Q1 PLANT SCIENCES
Chong Teng, Noah Fahlgren, Blake C. Meyers
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引用次数: 0

Abstract

Maize anthers emerge from male-only florets, a process that involves complex genetic programming and is affected by environmental factors. Quantifying anther exertion provides a key indicator of male fertility; however, traditional manual scoring methods are often subjective and labor-intensive. To address this limitation, we developed Tasselyzer — an accessible, cost-effective, and time-saving method for quantifying maize anther exertion. This image-based program uses the PlantCV platform to provide a quantitative assessment of anther exertion by capturing regional differences within the tassel based on the distinct color of anthers. We applied this method to 22 maize lines with six genotypes, showing high precision (F1 score > 0.8). Furthermore, we demonstrate that customizing the parameters to assay a specific line is straightforward and practical for enhancing precision in additional genotypes. Tasselyzer is a valuable resource for maize research and breeding programs, enabling automated and efficient assessments of anther exertion.

Abstract Image

Tasselyzer 是一种基于 PlantCV 的机器学习方法,用于量化玉米花药用力情况
玉米花药由雄性小花产生,这一过程涉及复杂的遗传程序,并受环境因素的影响。量化花药消耗是衡量男性生育能力的关键指标;然而,传统的人工评分方法往往是主观的和劳动密集型的。为了解决这一限制,我们开发了Tasselyzer -一种易于使用,成本效益高,节省时间的量化玉米花药消耗的方法。这个基于图像的程序使用PlantCV平台,通过捕获基于花药不同颜色的流苏内的区域差异,提供对花药作用的定量评估。我们将该方法应用于6个基因型的22个玉米品系,显示出较高的精度(F1得分>; 0.8)。此外,我们证明,自定义参数,以测定一个特定的线是直接和实用的,以提高其他基因型的精度。Tasselyzer是玉米研究和育种计划的宝贵资源,能够自动和有效地评估花药的消耗。
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来源期刊
The Plant Journal
The Plant Journal 生物-植物科学
CiteScore
13.10
自引率
4.20%
发文量
415
审稿时长
2.3 months
期刊介绍: Publishing the best original research papers in all key areas of modern plant biology from the world"s leading laboratories, The Plant Journal provides a dynamic forum for this ever growing international research community. Plant science research is now at the forefront of research in the biological sciences, with breakthroughs in our understanding of fundamental processes in plants matching those in other organisms. The impact of molecular genetics and the availability of model and crop species can be seen in all aspects of plant biology. For publication in The Plant Journal the research must provide a highly significant new contribution to our understanding of plants and be of general interest to the plant science community.
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