Diversification and evolution of serine/arginine-rich splicing factors in plants

IF 6.2 1区生物学 Q1 PLANT SCIENCES

The Plant Journal Pub Date : 2025-02-21 DOI:10.1111/tpj.70004

Mingxi Guo, Chao Liang, Mingyang Cui, Linlin Luo, Zhongtian Gao, Haolang Chen, Qi Xie, Jie Cui, Lin Liu, Beixin Mo, Lei Gao

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引用次数: 0

Abstract

In plants, serine/arginine-rich splicing factors (SRSFs) play an essential role in pre-mRNA splicing, influencing growth and stress response. The present study investigated the evolution and diversification of SR proteins in plants by phylogenetic analysis. First, we identified 1650 SR proteins from 132 plant species. Large-scale phylogenetic analysis divided these SR proteins into nine subfamilies: SR, RS, SC, SCL, RSZ, RS2Z, SR45, SR45a, and a newly discovered RSZ-like subfamily. The analysis also suggested that SR proteins of animals and plants originated from an ancient SR gene of a common ancestor of eukaryotes and showed that RSZ-like subfamily diverged in fern. We also found the presence of the newly discovered RSZ-like subfamily in ferns, gymnosperms, and angiosperms as a sister group of SR45 and SR45a, indicating a common ancestor. In addition, we detected deletion of the N-terminal RS domain in a few members of SR45 and SR45a of plants. These findings provide novel insights into the phylogeny of the SR gene family in plants, emphasizing their crucial function as a splicing factor.

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来源期刊

The Plant Journal 生物-植物科学

CiteScore

13.10

自引率

4.20%

发文量

415

审稿时长

2.3 months

期刊介绍： Publishing the best original research papers in all key areas of modern plant biology from the world"s leading laboratories, The Plant Journal provides a dynamic forum for this ever growing international research community. Plant science research is now at the forefront of research in the biological sciences, with breakthroughs in our understanding of fundamental processes in plants matching those in other organisms. The impact of molecular genetics and the availability of model and crop species can be seen in all aspects of plant biology. For publication in The Plant Journal the research must provide a highly significant new contribution to our understanding of plants and be of general interest to the plant science community.