Opportunities, challenges, and difficulties in NMR-based metabolomics applied to neovascular age-related macular degeneration (nAMD) patient follow-up.

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2025-01-28 eCollection Date: 2024-01-01 DOI:10.3389/fmolb.2024.1449226
M Schoumacher, V Lambert, M Campas, P Blaise, B Locht, M Thys, E Duchateau, E Cavalier, J-M Rakic, A Noël, P de Tullio
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引用次数: 0

Abstract

Introduction: This study applies NMR-based metabolomics to investigate neovascular age-related macular degeneration (nAMD), addressing challenges in patient management, disease progression evaluation, and treatment response assessment. A two-year follow-up of 29 nAMD patients undergoing treatment provided 231 time points for analysis.

Methods: Over the two-year period, 11 males and 18 females (aged 61-92 years) were monitored, yielding 231 time points. At each time point, blood samples for NMR metabolomics analysis, clinical measurements (e.g., lactate, glucose levels, HDL/LDL cholesterol, and blood pH), and optical coherence tomography (OCT) images were collected to evaluate the progression of choroidal neovascularization. 1H-NMR metabolomic analysis led to the quantification of over 60 metabolites and of the major lipoprotein fractions. Both multivariate and univariate statistical approaches tailored for longitudinal data were employed to identify biomarkers correlating metabolomic changes with ocular alterations during disease progression.

Results and discussion: Despite a rigorous analytical workflow enabling precise quantification of over 60 metabolites and the application of advanced statistical tools for longitudinal data, achieving consistent results across the cohort proved challenging. The dataset's heterogeneity, reflecting real-world clinical practice, complicated the derivation of global conclusions. Personalized analyses on a patient-by-patient basis successfully identified individual correlation models, but a universal model remained elusive. This study highlights the inherent challenges of translating findings from controlled settings into clinical practice, where factors such as visit frequency, treatment variability, and disease heterogeneity limit data uniformity. We emphasize the importance of experimental design in longitudinal studies, particularly when dealing with incomplete and variable datasets. We are therefore confident that, considering both the challenges and difficulties identified in this work and the preliminary results presented here, it is possible to develop predictive and individualized models for monitoring patients with nAMD. Such models could greatly assist clinicians in providing better care for these patients.

基于核磁共振的代谢组学应用于新生血管性年龄相关性黄斑变性(nAMD)患者随访的机遇、挑战和困难
本研究应用基于核磁共振的代谢组学研究新生血管性年龄相关性黄斑变性(nAMD),解决患者管理、疾病进展评估和治疗反应评估方面的挑战。对29名接受治疗的nAMD患者进行了为期两年的随访,提供了231个时间点进行分析。方法:对男性11例,女性18例(61 ~ 92岁)进行为期2年的监测,共获得231个时间点。在每个时间点,收集用于核磁共振代谢组学分析的血液样本、临床测量(如乳酸、葡萄糖水平、HDL/LDL胆固醇和血液pH值)和光学相干断层扫描(OCT)图像,以评估脉络膜新生血管的进展。1H-NMR代谢组学分析对60多种代谢物和主要脂蛋白组分进行了定量分析。采用纵向数据定制的多变量和单变量统计方法来识别疾病进展过程中代谢组学变化与眼部改变相关的生物标志物。结果和讨论:尽管严格的分析工作流程能够精确量化60多种代谢物,并应用先进的纵向数据统计工具,但在整个队列中获得一致的结果证明是具有挑战性的。数据集的异质性,反映了现实世界的临床实践,使全球结论的推导复杂化。在逐个患者的基础上进行个性化分析,成功地确定了个体相关模型,但普遍的模型仍然难以捉摸。本研究强调了将受控环境的研究结果转化为临床实践的内在挑战,其中诸如就诊频率、治疗变异性和疾病异质性等因素限制了数据的一致性。我们强调实验设计在纵向研究中的重要性,特别是在处理不完整和可变的数据集时。因此,我们相信,考虑到这项工作中发现的挑战和困难以及这里提出的初步结果,有可能开发出用于监测nAMD患者的预测性和个性化模型。这些模型可以极大地帮助临床医生为这些患者提供更好的护理。
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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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