Genetic Pattern and Demographic History of Orange-Spotted Grouper (Epinephelus coioides) in the South China Sea by the Influence of Pleistocene Climatic Oscillations

IF 2.3 2区生物学 Q2 ECOLOGY

Ecology and Evolution Pub Date : 2025-02-12 DOI:10.1002/ece3.70967

Yongkun Chen, Zihao Luo, Zhichao Zhang, Zhisen Luo, Manting Ren, Xiongbo He, Hung-Du Lin, Yunrong Yan

{"title":"Genetic Pattern and Demographic History of Orange-Spotted Grouper (Epinephelus coioides) in the South China Sea by the Influence of Pleistocene Climatic Oscillations","authors":"Yongkun Chen, Zihao Luo, Zhichao Zhang, Zhisen Luo, Manting Ren, Xiongbo He, Hung-Du Lin, Yunrong Yan","doi":"10.1002/ece3.70967","DOIUrl":null,"url":null,"abstract":"Orange-spotted groupers (Epinephelus coioides) are commercially important fish species that inhabit coral reef areas and are distributed across tropical coastal regions throughout the Indo-West Pacific Oceans. This study aims to assess the phylogeographic structure of E. coioides by analyzing 180 individuals collected from six locations along the coast of mainland China and Hainan Island, using the mitochondrial Cyt b gene and 17 microsatellite DNA markers. The mitochondrial DNA analysis revealed high haplotype diversity (0.882), while the microsatellite DNA data showed an average of 8.677 alleles among the six populations, indicating that all populations exhibit a high level of genetic diversity. The presence of two distinct evolutionary lineages of E. coioides, along with the lack of significant genealogical structures corresponding to sampling localities, suggests that isolation in marginal seas during glaciation with lower sea levels shaped their phylogeographic distribution patterns. The results from STRUCTURE, PCoA, and pairwise FST revealed significant genetic differentiation in the Lingshui region (LS population) compared to other populations, suggesting that the Lingshui region, adjacent to deep-sea areas, remained isolated during glacial periods as it was not connected to the continental shelf of mainland China. Analysis of demographic history using ABC revealed that E. coioides experienced historical lineage diversification and admixture due to secondary contact.","PeriodicalId":11467,"journal":{"name":"Ecology and Evolution","volume":"15 2","pages":""},"PeriodicalIF":2.3000,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/ece3.70967","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ecology and Evolution","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ece3.70967","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}

引用次数: 0

Abstract

Orange-spotted groupers (Epinephelus coioides) are commercially important fish species that inhabit coral reef areas and are distributed across tropical coastal regions throughout the Indo-West Pacific Oceans. This study aims to assess the phylogeographic structure of E. coioides by analyzing 180 individuals collected from six locations along the coast of mainland China and Hainan Island, using the mitochondrial Cyt b gene and 17 microsatellite DNA markers. The mitochondrial DNA analysis revealed high haplotype diversity (0.882), while the microsatellite DNA data showed an average of 8.677 alleles among the six populations, indicating that all populations exhibit a high level of genetic diversity. The presence of two distinct evolutionary lineages of E. coioides, along with the lack of significant genealogical structures corresponding to sampling localities, suggests that isolation in marginal seas during glaciation with lower sea levels shaped their phylogeographic distribution patterns. The results from STRUCTURE, PCoA, and pairwise F_ST revealed significant genetic differentiation in the Lingshui region (LS population) compared to other populations, suggesting that the Lingshui region, adjacent to deep-sea areas, remained isolated during glacial periods as it was not connected to the continental shelf of mainland China. Analysis of demographic history using ABC revealed that E. coioides experienced historical lineage diversification and admixture due to secondary contact.

Abstract Image

查看原文本刊更多论文

求助全文

约1分钟内获得全文求助全文

来源期刊

Ecology and Evolution ECOLOGY-

CiteScore

4.40

自引率

3.80%

发文量

1027

审稿时长

3-6 weeks

期刊介绍： Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment. Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.