Employing Observability Rank Conditions for Taking into Account Experimental Information a priori.

IF 2 4区 数学 Q2 BIOLOGY
Alejandro F Villaverde
{"title":"Employing Observability Rank Conditions for Taking into Account Experimental Information a priori.","authors":"Alejandro F Villaverde","doi":"10.1007/s11538-025-01415-3","DOIUrl":null,"url":null,"abstract":"<p><p>The concept of identifiability describes the possibility of inferring the parameters of a dynamic model by observing its output. It is common and useful to distinguish between structural and practical identifiability. The former property is fully determined by the model equations, while the latter is also influenced by the characteristics of the available experimental data. Structural identifiability can be determined by means of symbolic computations, which may be performed before collecting experimental data, and are hence sometimes called a priori analyses. Practical identifiability is typically assessed numerically, with methods that require simulations-and often also optimization-and are applied a posteriori. An approach to study structural local identifiability is to consider it as a particular case of observability, which is the possibility of inferring the internal state of a system from its output. Thus, both properties can be analysed jointly, by building a generalized observability matrix and computing its rank. The aim of this paper is to investigate to which extent such observability-based methods can also inform about practical aspects related with the experimental setup, which are usually not approached in this way. To this end, we explore a number of possible extensions of the rank tests, and discuss the purposes for which they can be informative as well as others for which they cannot.</p>","PeriodicalId":9372,"journal":{"name":"Bulletin of Mathematical Biology","volume":"87 3","pages":"39"},"PeriodicalIF":2.0000,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11802610/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bulletin of Mathematical Biology","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s11538-025-01415-3","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The concept of identifiability describes the possibility of inferring the parameters of a dynamic model by observing its output. It is common and useful to distinguish between structural and practical identifiability. The former property is fully determined by the model equations, while the latter is also influenced by the characteristics of the available experimental data. Structural identifiability can be determined by means of symbolic computations, which may be performed before collecting experimental data, and are hence sometimes called a priori analyses. Practical identifiability is typically assessed numerically, with methods that require simulations-and often also optimization-and are applied a posteriori. An approach to study structural local identifiability is to consider it as a particular case of observability, which is the possibility of inferring the internal state of a system from its output. Thus, both properties can be analysed jointly, by building a generalized observability matrix and computing its rank. The aim of this paper is to investigate to which extent such observability-based methods can also inform about practical aspects related with the experimental setup, which are usually not approached in this way. To this end, we explore a number of possible extensions of the rank tests, and discuss the purposes for which they can be informative as well as others for which they cannot.

利用可观察性秩条件考虑先验实验信息。
可辨识性的概念描述了通过观察动态模型的输出来推断其参数的可能性。区分结构可识别性和实际可识别性是常见和有用的。前者完全由模型方程决定,后者也受现有实验数据特性的影响。结构的可识别性可以通过符号计算来确定,这种计算可以在收集实验数据之前进行,因此有时被称为先验分析。实际可识别性通常是通过需要模拟(通常也需要优化)的方法进行数值评估,并在后验中应用。研究结构局部可辨识性的一种方法是将其视为可观察性的一种特殊情况,可观察性是从系统的输出推断系统内部状态的可能性。因此,可以通过建立广义可观察性矩阵并计算其秩来联合分析这两个性质。本文的目的是研究这种基于可观察性的方法在多大程度上也可以告知与实验设置相关的实际方面,这些方面通常不会以这种方式接近。为此,我们探讨了秩检验的一些可能的扩展,并讨论了它们可以提供信息的目的以及它们不能提供信息的其他目的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
3.90
自引率
8.60%
发文量
123
审稿时长
7.5 months
期刊介绍: The Bulletin of Mathematical Biology, the official journal of the Society for Mathematical Biology, disseminates original research findings and other information relevant to the interface of biology and the mathematical sciences. Contributions should have relevance to both fields. In order to accommodate the broad scope of new developments, the journal accepts a variety of contributions, including: Original research articles focused on new biological insights gained with the help of tools from the mathematical sciences or new mathematical tools and methods with demonstrated applicability to biological investigations Research in mathematical biology education Reviews Commentaries Perspectives, and contributions that discuss issues important to the profession All contributions are peer-reviewed.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信