A review on computational models for predicting protein solubility.

IF 3.3 4区 生物学 Q2 MICROBIOLOGY
Journal of Microbiology Pub Date : 2025-01-01 Epub Date: 2025-01-24 DOI:10.71150/jm.2408001
Teerapat Pimtawong, Jun Ren, Jingyu Lee, Hyang-Mi Lee, Dokyun Na
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引用次数: 0

Abstract

Protein solubility is a critical factor in the production of recombinant proteins, which are widely used in various industries, including pharmaceuticals, diagnostics, and biotechnology. Predicting protein solubility remains a challenging task due to the complexity of protein structures and the multitude of factors influencing solubility. Recent advances in computational methods, particularly those based on machine learning, have provided powerful tools for predicting protein solubility, thereby reducing the need for extensive experimental trials. This review provides an overview of current computational approaches to predict protein solubility. We discuss the datasets, features, and algorithms employed in these models. The review aims to bridge the gap between computational predictions and experimental validations, fostering the development of more accurate and reliable solubility prediction models that can significantly enhance recombinant protein production.

预测蛋白质溶解度的计算模型综述。
蛋白质的溶解度是生产重组蛋白的关键因素,重组蛋白广泛应用于制药、诊断和生物技术等各个行业。由于蛋白质结构的复杂性和影响蛋白质溶解度的因素众多,预测蛋白质的溶解度仍然是一项具有挑战性的任务。计算方法的最新进展,特别是基于机器学习的计算方法,为预测蛋白质溶解度提供了强大的工具,从而减少了对大量实验试验的需求。本文综述了目前预测蛋白质溶解度的计算方法。我们讨论了这些模型中使用的数据集、特征和算法。本文旨在弥补计算预测和实验验证之间的差距,促进更准确、更可靠的溶解度预测模型的发展,从而显著提高重组蛋白的产量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Microbiology
Journal of Microbiology 生物-微生物学
CiteScore
5.70
自引率
3.30%
发文量
0
审稿时长
3 months
期刊介绍: Publishes papers that deal with research on microorganisms, including archaea, bacteria, yeasts, fungi, microalgae, protozoa, and simple eukaryotic microorganisms. Topics considered for publication include Microbial Systematics, Evolutionary Microbiology, Microbial Ecology, Environmental Microbiology, Microbial Genetics, Genomics, Molecular Biology, Microbial Physiology, Biochemistry, Microbial Pathogenesis, Host-Microbe Interaction, Systems Microbiology, Synthetic Microbiology, Bioinformatics and Virology. Manuscripts dealing with simple identification of microorganism(s), cloning of a known gene and its expression in a microbial host, and clinical statistics will not be considered for publication by JM.
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