Augmenting Circadian Biology Research With Data Science.

IF 2.1 3区 生物学 Q2 BIOLOGY
Journal of Biological Rhythms Pub Date : 2025-04-01 Epub Date: 2025-01-29 DOI:10.1177/07487304241310923
Severine Soltani, Jamison H Burks, Benjamin L Smarr
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引用次数: 0

Abstract

The nature of biological research is changing, driven by the emergence of big data, and new computational models to parse out the information therein. Traditional methods remain the core of biological research but are increasingly either augmented or sometimes replaced by emerging data science tools. This presents a profound opportunity for those circadian researchers interested in incorporating big data and related analyses into their plans. Here, we discuss the emergence of novel sources of big data that could be used to gain real-world insights into circadian biology. We further discuss technical considerations for the biologist interested in including data science approaches in their research. We conversely discuss the biological considerations for data scientists so that they can more easily identify the nuggets of biological rhythms insight that might too easily be lost through application of standard data science approaches done without an appreciation of the way biological rhythms shape the variance of complex data objects. Our hope is that this review will make bridging disciplines in both directions (biology to computational and vice versa) easier. There has never been such rapid growth of cheap, accessible, real-world research opportunities in biology as now; collaborations between biological experts and skilled data scientists have the potential to mine out new insights with transformative impact.

用数据科学增强昼夜生物学研究。
在大数据的出现和新的计算模型的推动下,生物研究的性质正在发生变化。传统方法仍然是生物学研究的核心,但越来越多地被新兴的数据科学工具所增强或有时所取代。这为那些有兴趣将大数据和相关分析纳入计划的昼夜节律研究人员提供了一个深刻的机会。在这里,我们讨论了新的大数据来源的出现,这些大数据可以用来获得现实世界中昼夜节律生物学的见解。我们进一步讨论了对在其研究中包含数据科学方法感兴趣的生物学家的技术考虑。相反,我们讨论了数据科学家的生物学考虑,以便他们可以更容易地识别生物节律洞察力的金块,这些金块可能很容易通过应用标准数据科学方法而丢失,而没有欣赏生物节律塑造复杂数据对象变化的方式。我们的希望是,这篇综述将使两个方向(生物学到计算学,反之亦然)的衔接学科变得更容易。在生物学领域,从来没有像现在这样廉价、便捷、真实的研究机会增长如此之快;生物专家和熟练的数据科学家之间的合作有可能挖掘出具有变革性影响的新见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
6.10
自引率
8.60%
发文量
48
审稿时长
>12 weeks
期刊介绍: Journal of Biological Rhythms is the official journal of the Society for Research on Biological Rhythms and offers peer-reviewed original research in all aspects of biological rhythms, using genetic, biochemical, physiological, behavioral, epidemiological & modeling approaches, as well as clinical trials. Emphasis is on circadian and seasonal rhythms, but timely reviews and research on other periodicities are also considered. The journal is a member of the Committee on Publication Ethics (COPE).
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