Chenghao Liu, Shuncheng Jia, Hongxing Liu, Xuanle Zhao, Chengyu T Li, Bo Xu, Tielin Zhang
{"title":"Recurrent neural networks with transient trajectory explain working memory encoding mechanisms.","authors":"Chenghao Liu, Shuncheng Jia, Hongxing Liu, Xuanle Zhao, Chengyu T Li, Bo Xu, Tielin Zhang","doi":"10.1038/s42003-024-07282-3","DOIUrl":null,"url":null,"abstract":"<p><p>Whether working memory (WM) is encoded by persistent activity using attractors or by dynamic activity using transient trajectories has been debated for decades in both experimental and modeling studies, and a consensus has not been reached. Even though many recurrent neural networks (RNNs) have been proposed to simulate WM, most networks are designed to match respective experimental observations and show either transient or persistent activities. Those few which consider networks with both activity patterns have not attempted to directly compare their memory capabilities. In this study, we build transient-trajectory-based RNNs (TRNNs) and compare them to vanilla RNNs with more persistent activities. The TRNN incorporates biologically plausible modifications, including self-inhibition, sparse connection and hierarchical topology. Besides activity patterns resembling animal recordings and retained versatility to variable encoding time, TRNNs show better performance in delayed choice and spatial memory reinforcement learning tasks. Therefore, this study provides evidence supporting the transient activity theory to explain the WM mechanism from the model designing point of view.</p>","PeriodicalId":10552,"journal":{"name":"Communications Biology","volume":"8 1","pages":"137"},"PeriodicalIF":5.2000,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11775331/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Communications Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1038/s42003-024-07282-3","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Whether working memory (WM) is encoded by persistent activity using attractors or by dynamic activity using transient trajectories has been debated for decades in both experimental and modeling studies, and a consensus has not been reached. Even though many recurrent neural networks (RNNs) have been proposed to simulate WM, most networks are designed to match respective experimental observations and show either transient or persistent activities. Those few which consider networks with both activity patterns have not attempted to directly compare their memory capabilities. In this study, we build transient-trajectory-based RNNs (TRNNs) and compare them to vanilla RNNs with more persistent activities. The TRNN incorporates biologically plausible modifications, including self-inhibition, sparse connection and hierarchical topology. Besides activity patterns resembling animal recordings and retained versatility to variable encoding time, TRNNs show better performance in delayed choice and spatial memory reinforcement learning tasks. Therefore, this study provides evidence supporting the transient activity theory to explain the WM mechanism from the model designing point of view.
期刊介绍:
Communications Biology is an open access journal from Nature Research publishing high-quality research, reviews and commentary in all areas of the biological sciences. Research papers published by the journal represent significant advances bringing new biological insight to a specialized area of research.