Revealing microRNA regulation in single cells.

IF 13.6 2区 生物学 Q1 GENETICS & HEREDITY
Ranjan K Maji, Matthias S Leisegang, Reinier A Boon, Marcel H Schulz
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引用次数: 0

Abstract

MicroRNAs (miRNAs) are key regulators of gene expression and control cellular functions in physiological and pathophysiological states. miRNAs play important roles in disease, stress, and development, and are now being investigated for therapeutic approaches. Alternative processing of miRNAs during biogenesis results in the generation of miRNA isoforms (isomiRs) which further diversify miRNA gene regulation. Single-cell RNA-sequencing (scsRNA-seq) technologies, together with computational strategies, enable exploration of miRNAs, isomiRs, and interacting RNAs at the cellular level. By integration with other miRNA-associated single-cell modalities, miRNA roles can be resolved at different stages of processing and regulation. In this review we discuss (i) single-cell experimental assays that measure miRNA and isomiR abundances, and (ii) computational methods for their analysis to investigate the mechanisms of miRNA biogenesis and post-transcriptional regulation.

揭示单细胞中的microRNA调控。
MicroRNAs (miRNAs)是基因表达的关键调控因子,在生理和病理生理状态下控制细胞功能。mirna在疾病、应激和发育中发挥重要作用,目前正在研究治疗方法。在生物发生过程中,miRNA的不同加工导致miRNA异构体(isomir)的产生,这进一步使miRNA基因调控多样化。单细胞rna测序(scsRNA-seq)技术,连同计算策略,可以在细胞水平上探索mirna, isomir和相互作用的rna。通过与其他miRNA相关的单细胞模式的整合,miRNA的作用可以在不同的加工和调节阶段得到解决。在这篇综述中,我们讨论了(i)测量miRNA和isomiR丰度的单细胞实验分析,以及(ii)用于分析miRNA生物发生和转录后调控机制的计算方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Trends in Genetics
Trends in Genetics 生物-遗传学
CiteScore
20.90
自引率
0.90%
发文量
160
审稿时长
6-12 weeks
期刊介绍: Launched in 1985, Trends in Genetics swiftly established itself as a "must-read" for geneticists, offering concise, accessible articles covering a spectrum of topics from developmental biology to evolution. This reputation endures, making TiG a cherished resource in the genetic research community. While evolving with the field, the journal now embraces new areas like genomics, epigenetics, and computational genetics, alongside its continued coverage of traditional subjects such as transcriptional regulation, population genetics, and chromosome biology. Despite expanding its scope, the core objective of TiG remains steadfast: to furnish researchers and students with high-quality, innovative reviews, commentaries, and discussions, fostering an appreciation for advances in genetic research. Each issue of TiG presents lively and up-to-date Reviews and Opinions, alongside shorter articles like Science & Society and Spotlight pieces. Invited from leading researchers, Reviews objectively chronicle recent developments, Opinions provide a forum for debate and hypothesis, and shorter articles explore the intersection of genetics with science and policy, as well as emerging ideas in the field. All articles undergo rigorous peer-review.
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