Unveiling the role of miRNAs in Diminished Ovarian Reserve: an in silico network approach.

IF 2.1 4区 医学 Q3 ANDROLOGY
Costanza Cimini, Angela Taraschi, Marina Ramal-Sanchez, Alessia Colosimo, Carlo Di Carlo, Ramses Belda-Perez, Luca Valbonetti, Giulia Capacchietti, Nicola Bernabò, Barbara Barboni
{"title":"Unveiling the role of miRNAs in Diminished Ovarian Reserve: an in silico network approach.","authors":"Costanza Cimini, Angela Taraschi, Marina Ramal-Sanchez, Alessia Colosimo, Carlo Di Carlo, Ramses Belda-Perez, Luca Valbonetti, Giulia Capacchietti, Nicola Bernabò, Barbara Barboni","doi":"10.1080/19396368.2024.2434268","DOIUrl":null,"url":null,"abstract":"<p><p>MicroRNAs (miRNAs) have acquired an increased recognition to unravel the complex molecular mechanisms underlying Diminished Ovarian Reserve (DOR), one of the main responsible for infertility. To investigate the impact of miRNA profiles in granulosa cells and follicular fluid, crucial players in follicle development, this study employed a computational network theory approach to reconstruct potential pathways regulated by miRNAs in granulosa cells and follicular fluid of women suffering from DOR. Available data from published research were collected to create the FGC_MiRNome_MC, a representation of miRNA target genes and their interactions. 365 hubs were identified within the network, representing potential key regulators, and 210 nodes that act as both hubs and bottlenecks (H&BN nodes), suggesting that they may control the information flow within the network. GO enrichment analysis of the 210 H&BN nodes revealed their involvement in fundamental cellular processes relevant to ovarian function. In particular, the cluster analysis identified several shared pathways between cluster 1 and cluster 2 involved in the RAS/MAPK pathway, which plays a critical role in cell proliferation, differentiation and survival. These findings suggest that miRNAs play a significant role in DOR and highlight the potential of the RAS/MAPK pathway as a target for further investigation. Additionally, the genes identified as both hubs and bottlenecks revealed interesting connections to reproductive health in KO mice models. This <i>in silico</i> approach provides valuable insights into potential biomarkers and therapeutic targets for age-related reproductive disorders.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":"71 1","pages":"2-12"},"PeriodicalIF":2.1000,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Systems Biology in Reproductive Medicine","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1080/19396368.2024.2434268","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/25 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"ANDROLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

MicroRNAs (miRNAs) have acquired an increased recognition to unravel the complex molecular mechanisms underlying Diminished Ovarian Reserve (DOR), one of the main responsible for infertility. To investigate the impact of miRNA profiles in granulosa cells and follicular fluid, crucial players in follicle development, this study employed a computational network theory approach to reconstruct potential pathways regulated by miRNAs in granulosa cells and follicular fluid of women suffering from DOR. Available data from published research were collected to create the FGC_MiRNome_MC, a representation of miRNA target genes and their interactions. 365 hubs were identified within the network, representing potential key regulators, and 210 nodes that act as both hubs and bottlenecks (H&BN nodes), suggesting that they may control the information flow within the network. GO enrichment analysis of the 210 H&BN nodes revealed their involvement in fundamental cellular processes relevant to ovarian function. In particular, the cluster analysis identified several shared pathways between cluster 1 and cluster 2 involved in the RAS/MAPK pathway, which plays a critical role in cell proliferation, differentiation and survival. These findings suggest that miRNAs play a significant role in DOR and highlight the potential of the RAS/MAPK pathway as a target for further investigation. Additionally, the genes identified as both hubs and bottlenecks revealed interesting connections to reproductive health in KO mice models. This in silico approach provides valuable insights into potential biomarkers and therapeutic targets for age-related reproductive disorders.

揭示 miRNA 在卵巢储备功能减退中的作用:硅网络方法。
MicroRNAs (miRNAs)已经获得了越来越多的认识,以揭示卵巢储备功能减退(DOR)的复杂分子机制,DOR是不孕不育的主要原因之一。为了研究在卵泡发育中起关键作用的颗粒细胞和卵泡液中miRNA谱的影响,本研究采用计算网络理论方法重建DOR女性颗粒细胞和卵泡液中miRNA调控的潜在途径。从已发表的研究中收集可用数据来创建FGC_MiRNome_MC,这是miRNA靶基因及其相互作用的代表。在网络中确定了365个集线器,代表潜在的关键监管机构,以及210个既充当集线器又充当瓶颈(H&BN节点)的节点,这表明它们可能控制网络中的信息流。210个H&BN节点的氧化石墨烯富集分析显示,它们参与与卵巢功能相关的基本细胞过程。特别是,聚类分析发现了集群1和集群2之间涉及RAS/MAPK通路的几个共享通路,RAS/MAPK通路在细胞增殖、分化和存活中起着关键作用。这些发现表明,mirna在DOR中起着重要作用,并突出了RAS/MAPK通路作为进一步研究目标的潜力。此外,在KO小鼠模型中,被确定为枢纽和瓶颈的基因揭示了与生殖健康的有趣联系。这种计算机方法为与年龄有关的生殖疾病的潜在生物标志物和治疗靶点提供了有价值的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
4.30
自引率
4.20%
发文量
27
审稿时长
>12 weeks
期刊介绍: Systems Biology in Reproductive Medicine, SBiRM, publishes Research Articles, Communications, Applications Notes that include protocols a Clinical Corner that includes case reports, Review Articles and Hypotheses and Letters to the Editor on human and animal reproduction. The journal will highlight the use of systems approaches including genomic, cellular, proteomic, metabolomic, bioinformatic, molecular, and biochemical, to address fundamental questions in reproductive biology, reproductive medicine, and translational research. The journal publishes research involving human and animal gametes, stem cells, developmental biology and toxicology, and clinical care in reproductive medicine. Specific areas of interest to the journal include: male factor infertility and germ cell biology, reproductive technologies (gamete micro-manipulation and cryopreservation, in vitro fertilization/embryo transfer (IVF/ET) and contraception. Research that is directed towards developing new or enhanced technologies for clinical medicine or scientific research in reproduction is of significant interest to the journal.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信