{"title":"Predicting TNFRSF4 expression and prognosis in head and neck squamous cell carcinoma tissue: a pathological image analysis approach.","authors":"Weiming Chu, Chen Chu, Zongmei Ding, Wei Guan, Shiyuan Li, Jixin Jiang, Yu Xue, Jianping Qiu, Aijun Guo","doi":"10.5114/pjp.2024.146147","DOIUrl":null,"url":null,"abstract":"<p><p>Head and neck squamous cell carcinoma (HNSCC) exhibits a poor 5-year survival rate. TNFRSF4 is gaining attention in tumor therapy. The objective of this study was to forecast the expression of TNFRSF4 in HNSCC tissue using analysis of pathological images and investigate its possible molecular mechanisms. Transcriptome, clinical, and pathological data of HNSCC patients from the TCGA database were analyzed. Features were extracted with PyRadiomics for support vector machine model development. The evaluation of model performance was conducted using ROC curve, calibration curve, and decision curve analyses. The correlation between pathomics score (PS), patient prognosis, and immune- related genes was assessed. TNFRSF4 expression was significantly higher in the tumor group and indepen-dently associated with HNSCC prognosis. Features were extracted to build a predictive model for TNFRSF4, which demonstrated strong performance. PS correlated positively with immune-related genes. This research highlights the potential of TNFRSF4 as a prognostic factor and demonstrates the utility of PS in relation to immune-related genes.</p>","PeriodicalId":49692,"journal":{"name":"Polish Journal of Pathology","volume":"75 4","pages":"287-304"},"PeriodicalIF":0.7000,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Polish Journal of Pathology","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.5114/pjp.2024.146147","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PATHOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Head and neck squamous cell carcinoma (HNSCC) exhibits a poor 5-year survival rate. TNFRSF4 is gaining attention in tumor therapy. The objective of this study was to forecast the expression of TNFRSF4 in HNSCC tissue using analysis of pathological images and investigate its possible molecular mechanisms. Transcriptome, clinical, and pathological data of HNSCC patients from the TCGA database were analyzed. Features were extracted with PyRadiomics for support vector machine model development. The evaluation of model performance was conducted using ROC curve, calibration curve, and decision curve analyses. The correlation between pathomics score (PS), patient prognosis, and immune- related genes was assessed. TNFRSF4 expression was significantly higher in the tumor group and indepen-dently associated with HNSCC prognosis. Features were extracted to build a predictive model for TNFRSF4, which demonstrated strong performance. PS correlated positively with immune-related genes. This research highlights the potential of TNFRSF4 as a prognostic factor and demonstrates the utility of PS in relation to immune-related genes.
期刊介绍:
Polish Journal of Pathology is an official magazine of the Polish Association of Pathologists and the Polish Branch of the International Academy of Pathology. For the last 18 years of its presence on the market it has published more than 360 original papers and scientific reports, often quoted in reviewed foreign magazines. A new extended Scientific Board of the quarterly magazine comprises people with recognised achievements in pathomorphology and biology, including molecular biology and cytogenetics, as well as clinical oncology. Polish scientists who are working abroad and are international authorities have also been invited. Apart from presenting scientific reports, the magazine will also play a didactic and training role.